African savannah elephant
Loxodonta africana
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 1-2005
Project URL
BI/MIT (USA)
(URL)
Anole Lizard
Anolis carolinensis
Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 7-2006
End: 7-2006
Project URL
BI/MIT (USA)
(URL)
Armadillo
Dasypus novemcinctus
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 1-2005
Project URL
BI/MIT (USA)
(URL)
Aspergillus
Aspergillus nidulans
Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2-2003
End: 2-2003
Project URL
BI/MIT (USA)
(URL)
Ron Morris, UMDNJ; Fungal Genome Initiative Steering Committee
Aspergillus
Aspergillus terreum NIH 2624
Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2005
End: 12-2005
Project URL
BI/MIT (USA)
(URL)
David Denning, U. Manchester; Bill Nierman, TIGR
Baker's yeast
Saccharomyces cerevisiae RM11-1a
Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; Jackie Whittle, FHCRC
Bat, Little Brown
Myotis lucifugus
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 8-2005
End: 10-2005
BI/MIT (USA)
(URL)
Burkholderia
Burkholderia cenocepacia PC184
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Stephen Lory, HMS
Burkholderia
Burkholderia dolosa AU0158
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Stephen Lory, HMS
Causative agent, Malaria
Plasmodium falciparum Dd2
Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 2005
End: 2005
Project URL
BI/MIT (USA)
(URL)
Dan Hartl, Harvard; Dyann Wirth, HSPH
Causative agent, Malaria
Plasmodium falciparum HB3
Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 2005
End: 2005
Project URL
BI/MIT (USA)
(URL)
Dan Hartl, Harvard; Dyann Wirth, HSPH
Chaetomium
Chaetomium globosum
Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; Wendy Untereiner, Brandon University
Chimpanzee
Pan troglodytes
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 5-2003
End: unspec.
BI/MIT (USA)
(URL)
WUGSC
Chimpanzee
Pan troglodytes
Genome SNP discovery
Whole Genome Shotgun
Completed
Start: 8-2004
End: 8-2004
Project URL
BI/MIT (USA)
(URL)
Coccidioides
Coccidioides immitis
Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; Theo Kirkland, UCSD
Coccidioides
Coccidioides immitis strain H538.4
Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: 5-2006
Project URL
BI/MIT (USA)
(URL)
Galgiani, Orback, Taylor, Cole, Kirkland, Gardner
Coccidioides posodasii RMSCC 2133
Coccidioides posodasii
Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 4-2006
End: 9-2006
Project URL
BI/MIT (USA)
(URL)
Coprinus
Coprinus cinereus
Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 6-2003
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Patricia Pukkila, UNC; Fungal Genome Initiative Steering Committee
Corn Smut Disease
Ustilago maydis
Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 7-2003
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Joerg Kaemper, MPI Marburg; Fungal Genome Initiative Steering Committee
Cryptococcus
Cryptococcus neoformans Serotype A
Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 5-2003
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Joseph Heitman, Duke; Fungal Genome Initiative Steering Committee
Cryptococcus
Cryptococcus neoformans Serotype B
Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; Fred Dietrich, Duke
Dog
Canis familiaris
Genome Draft Assembly
Whole Genome Shotgun (6.5X)
Completed
Start: 6-2004
End: 6-2004
Project URL
BI/MIT (USA)
(URL)
Canine Genome Mapping Community
Dog
Canis familiaris
Genome SNP discovery
Whole Genome Shotgun
Completed
Start: 8-2004
End: 8-2004
Project URL
BI/MIT (USA)
(URL)
Canine Genome Mapping Community
Francisella
Francisella novicida GA99-3549
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Scott Bearden, CDC
Francisella
Francisella novicidia GA99-3548
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Scott Bearden, CDC
Fruitfly
Drosophila persimilis
Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA)
(URL)
Fruitfly
Drosophila sechellia
Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 8-2005
End: 8-2005
Project URL
BI/MIT (USA)
(URL)
Fusarium
Fusarium oxysporum
Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 2-2006
End: 9-2006
BI/MIT (USA)
(URL)
Fusarium
Fusarium verticillioides
Genome SNP discovery
Whole Genome Shotgun (1X)
Completed
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA)
(URL)
Mark Rose, Syngenta
Galago/Bush Baby
Otolemur garnetti
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 12-2005
End: 1-2006
Project URL
BI/MIT (USA)
(URL)
Sheree Watson, University of Southern Mississippi
Glume blotch
Stagonospora nodorum
Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2003
End: 1-2003
Project URL
BI/MIT (USA)
(URL)
Richard Oliver, Murdoch U.; Peter Solomon, Murdoch U.
Guinea pig
Cavia porcellus
Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA)
(URL)
Hedgehog, European
Erinaceus europeaus
Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 10-2005
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
Hepatitis C Virus
N/A
Genome Draft Assembly
(0.5X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Todd Allen, MGH; Carla Kuiken, LANL
Histoplasma
Histoplasma capsulatum NAm1
Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 8-2005
End: 8-2005
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; John Taylor, Berkeley
Horse
Equus caballus
Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 2-2006
End: 8-2006
Project URL
BI/MIT (USA)
(URL)
Human
Homo sapiens
Chr 8, 15, 17, 18q Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Human
Homo sapiens
Genome SNP discovery
Whole Genome Shotgun (1X)
Completed
Start: 8-2004
End: 8-2004
Project URL
BI/MIT (USA)
(URL)
Human pathogen
Pneumocystis carinii
Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Melanie Cushion, University of Cincinnati; Fungal Genome Initiative Steering Committee
Lemur, Gray Mouse
Microcebus murinus
Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 9-2006
End: 12-2006
Project URL
BI/MIT (USA)
(URL)
Lodderomyces
Lodderomyces elongisporus
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 10-2005
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; Joe Heitman, Duke
Mold, Gray
Botrytis cinerea
Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA)
(URL)
Mark Rose, Syngenta
Mold, White
Sclerotinia sclerotiorum
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 6-2005
End: 6-2005
Project URL
BI/MIT (USA)
(URL)
Martin Dickman, U. Nebraska; Jeffrey Rollins, U. Florida; Linda Kohn, U. Toronto
Mosquito
Aedes aegyptii
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 10-2005
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
David Severson, University of Notre Dame; Dennis Knudson, Colorado State University; Brendan Loftus, TIGR
Mosquito
Culex pipiens quinquefasciatus
Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Peter Atkinson, U. California; Frank Collins, U. Notre Dame; Janet Hemingway, U. Liverpool; Malcolm Gardner, TIGR
Mouse
Mus musculus
Regions on all chr. excluding 2, 4, 11, X Finished region
Whole Genome Shotgun Finishing
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
SI, WUGSC
Mouse pathogen
Pneumocystis carinii
Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Melanie Cushion, University of Cincinnati; Fungal Genome Initiative Steering Committee
Neurospora
Neurospora crassa
Genome Finished
Whole Genome Shotgun (10X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Oregon Graduate Institute of Science and Technology; University of Kentucky; University of Kansas Medical Center
Opossum
Monodelphis domestica
Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 10-2004
End: 10-2004
Project URL
BI/MIT (USA)
(URL)
WUGSC
Pika
Ochotona princeps
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 8-2006
End: 12-2006
Project URL
BI/MIT (USA)
(URL)
Potato late blight fungus
Phytophthora infestans
Genome Draft Assembly,
Other,
Characterize polymorphism and heterozygosity
Whole Genome Shotgun (7X)
Start: 11-2005
End: 10-2007
Project URL
BI/MIT (USA)
(URL)
Also involves Cornell University, University of California Riverside, North Carolina State University, Ohio State University
Rabbit
Oryctolagus cuniculus
Genome Draft Assembly
Low Coverage (2X)
Completed
Start: 1-2005
End: 1-2005
Project URL
BI/MIT (USA)
(URL)
Rabbit fever
Francisella philomirangia ATCC25015
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Scott Bearden, CDC
Rabbit fever
Francisella tularensis ATCC6223
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Scott Bearden, CDC
Rabbit fever
Francisella tularensis FSC 022
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Scott Bearden, CDC
Rabbit fever
Francisella tularensis FSC 033
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Mats Forsman, FOI
Rabbit fever
Francisella tularensis FSC 257
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Mats Forsman, FOI
Rabbit fever
Francisella tularensis MA00-2987
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2005
End: 12-2005
Project URL
BI/MIT (USA)
(URL)
Emilio Garcia, LLNL; Francis Nano, U. Victoria; Paul Keim, Northern Arizona U.; Scott Bearden, CDC
Rhizopus
Rhizopus oryzae
Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Ashraf Ibrahim, UCLA; Fungal Genome Initiative Steering Committee
Rice blast
Magnaporthe grisea
Genome Finished
Whole Genome Shotgun (7X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
International Rice Blast Genome Consortium
Schizosaccharomyces
Schizosaccharomyces octosporus
Genome Draft Assembly,
Other,
Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 7-2005
End: 7-2006
Project URL
BI/MIT (USA)
(URL)
Nick Rhind
Schizzosaccharomyces
Schizzosaccharomyces japonicus
Genome Other,
Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 1-2006
End: 1-2006
Project URL
BI/MIT (USA)
(URL)
Nick Rhind
Sea squirt
Ciona savignyi
Genome Draft Assembly
Whole Genome Shotgun (13X)
Completed
Start: 11-2003
End: 11-2003
Project URL
BI/MIT (USA)
(URL)
Arend Sidow, Stanford University
Shrew, Tree
Tupaia belangeri
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 9-2005
End: 12-2005
Project URL
BI/MIT (USA)
(URL)
German Primate Center
Squirrel, Ground
Spermophilus tridecemlineatus
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 10-2005
End: 12-2005
Project URL
BI/MIT (USA)
(URL)
Stickleback, Three-spined
Gasterosteus aculeatus
Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 9-2005
End: 9-2005
Project URL
BI/MIT (USA)
(URL)
David Kingsley, Stanford
Tenrec
Echinops telfairi
Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 5-2005
End: 5-2005
Project URL
BI/MIT (USA)
(URL)
Tick
Ixodes scapularis
Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 2-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Vish Nene, TIGR; Catherine Hill, Purdue; Stephen Wikel, UCHC
Uncinocarpus
Uncinocarpus reesii
Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 11-2005
End: 11-2005
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; John Taylor, Berkeley
Wheat head blight
Fusarium graminearum
Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 5-2003
End: 5-2003
Project URL
BI/MIT (USA)
(URL)
Corby Kistler, University of Minnesota
Wheat stem rust
Puccinia graminis
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
Les Szabo, U. Minnesota; Ralph Dean, NC State; Jacqueline Schein, British Columbia Cancer Agency Genome Sciences Ctr
White mold
Sclerotinia sclerotiorum
Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 6-2005
End: 6-2005
Project URL
BI/MIT (USA)
(URL)
Martin Dickman, U. Nebraska; Jeffrey Rollins, U. Florida; Linda Kohn, U. Toronto
Yeast
Candida albicans WO-1
Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 10-2005
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; T. Srikantha, University of Iowa
Yeast
Candida guilliermondii
Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; Joe Heitman, Duke
Yeast
Candida lusitaniae
Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; Joe Heitman, Duke
Yeast
Candida tropicalis
Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
Fungal Genome Initiative Steering Committee; T. Srikantha, University of Iowa


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