Chimpanzee
Pan troglodytes
 Mammal Chr 22: 8.5Mb Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2003
End: unspec.
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
Rat
Rattus norvegicus
 Mammal Chr 1, 10: 10Mb (selected QTLs) Other,
Partially Finished
BAC-based Shotgun (or other large clone) (4X) Finishing (10X)
Completed
Start: 2-2004
End: 12-2004
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
Rat
Rattus norvegicus
 Mammal MHC Chr 20: 4 Mb Finished
BAC-based Shotgun (or other large clone) Finishing
Start: 5-2003
End: unspec.
Project URL
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
Mouse
Mus musculus
 Mammal Chr 2: 1Mb Finished region
BAC-based Shotgun (or other large clone) Finishing
Start: 3-2004
End: unspec.
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
Mouse
Mus musculus
 Mammal Chr 12 (IgH locus): 2 Mb Finished region
BAC-based Shotgun (or other large clone) (4X) Finishing (10X)
Start: 3-2004
End: unspec.
Project URL
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
Arthroderma benhamiae
Arthroderma benhamiae
 Fungus Genome Draft Assembly,
Finished region
Whole Genome Shotgun (8X)
Start: 1-2007
End: 12-2008
Project URL
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
TKM (Thüringer Kultusministerium) http://www.thueringen.de/de/tkm; WGL (Wissenschaftsgemeinschaft Gottfried Wilhelm Leibniz) http://www.wgl.de; HKI (Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute) http://www.hki-jena.de
Turquoise killifish
Nothobranchius furzeri
 Fish Genome Other,
Whole Genome Sample Sequences
Whole Genome Shotgun (0.5X)
Start: 5-2006
End: 4-2008
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
TKM (Thüringer Kultusministerium) http://www.thueringen.de/de/tkm; WGL (Wissenschaftsgemeinschaft Gottfried Wilhelm Leibniz) http://www.wgl.de
Chimpanzee
Pan troglodytes
 Mammal 40Mb on chromosome X Finished region
BAC-based Shotgun (or other large clone) Finishing
Start: 7-2005
End: 6-2008
Project URL
GGSAC (Germany)
(URL)
BMBF (Germany) (URL)
Slime mold
Dictyostelium discoideum
 Protist Chr 1, 2, 3 Finished region
Whole Genome Shotgun (6.5X)
Completed
Start: 12-2003
End: 5-2005
Project URL
GGSAC (Germany)
(URL)
DFG (Germany) (URL)
Slime mold
Dictyostelium fasciculatum
 Protist Genome Draft Assembly,
Regional assembly,
Finished region
Whole Genome Shotgun (8X)
Start: 3-2006
End: 3-2008
GGSAC (Germany)
(URL)
DFG (Germany) (URL)
Slime mold
Polysphondilium pallidum
 Protist whole genome Finished genome
Whole Genome Shotgun Finishing
Start: 3-2006
End: 12-2008
GGSAC (Germany)
(URL)
DFG (Germany) (URL)
Wellcome Trust (URL)
Salmon
Salmo salar
 Fish 4 Mb Unspecified
BAC-based Shotgun (or other large clone)
Start: 2005
End: unspec.
Project URL
BCGSC (Canada)
(URL)
Genome Canada (Canada) (URL)
NHGRI (URL)
Cryptococcus
Cryptococcus neoformans WM276
 Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 2006
End: 1-2006
Project URL
BCGSC (Canada)
(URL)
Genome Canada (Canada) (URL)
Poplar
Populus spp.
 Plant Genome Other,
Unspecified
Other
Completed
Start: 2006
End: 1-2006
Project URL
BCGSC (Canada)
(URL)
Genome Canada (Canada) (URL)
Bovine
Bos taurus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 11-2006
End: 2007
Project URL
BCM-HGSC (USA)
(URL)
Genome Canada (USA) (URL)
USDA (URL)
NHGRI (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus
 Mammal Selected regions Holstein breed SNP discovery
BAC-based Shotgun (or other large clone)
Start: 3-2006
End: 2006
Project URL
BCM-HGSC (USA)
(URL)
Genome Canada (USA) (URL)
USDA (URL)
NHGRI (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus
 Mammal Genomes of 8 breeds SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
Genome Canada (USA) (URL)
USDA (URL)
NHGRI (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Nematode
Pristionchus pacificus var California
 Invertebrate Animal Genome BAC-end sequence,
Draft Assembly
Whole Genome Shotgun (9X)
Start: 8-2004
End: 2007
Project URL
WUGSC (USA)
(URL)
Genome Canada (USA) (URL)
NHGRI (URL)
Fruitfly
Drosophila melanogaster
 Invertebrate Animal Genome Finished
Finishing
Completed
Start: 1-2001
End: unspec.
BCM-HGSC (USA)
(URL)
HHMI (USA) (URL)
NHGRI (URL)
NIGMS (URL)
NCI (URL)
Fruitfly
Drosophila melanogaster
 Invertebrate Animal Genome Finished
Finishing
Completed
Start: 1-2001
End: unspec.
BCM-HGSC (USA)
(URL)
NCI (USA) (URL)
NHGRI (URL)
NIGMS (URL)
HHMI (URL)
Rat
Rattus norvegicus
 Mammal QTLs Finishing
Whole Genome Shotgun BAC-based Shotgun (or other large clone)
Completed
Start: 12-2004
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 3, 12, part of X Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila pseudoobscura
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 10-2003
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Sea urchin
Strongylocentrotus purpuratus
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Genome SNP discovery
Whole Genome Shotgun (1X)
Completed
Start: 5-2004
End: unspec.
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) BAC-based Shotgun (or other large clone) (2X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 2, 4, 7, Y Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Mouse
Mus musculus
 Mammal Regions on all chr. excluding 2,4, 11, X Finished region
Whole Genome Shotgun BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 12-2005
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Mouse
Mus musculus
 Mammal Regions on all chr. excluding 2, 4, 11, X Finished region
Whole Genome Shotgun Finishing
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes
 Mammal Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Completed
Start: 5-2003
End: 8-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Aspergillus
Aspergillus nidulans FGSC-4A
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2-2003
End: 2-2003
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Coprinus
Coprinus cinereus okyama 7#130
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 6-2003
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Cryptococcus
Cryptococcus neoformans sero A H99
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 5-2003
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Rat
Rattus norvegicus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (5X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 1-2003
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
NHLBI (URL)
Rat
Rattus norvegicus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (5X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 1-2003
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
NHLBI (URL)
Human
Homo sapiens
 Mammal Chr 8, 15, 17, 18q Finished genome
BAC-based Shotgun (or other large clone) Finishing
Start: 4-2003
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Genome SNP discovery
Whole Genome Shotgun (1X)
Completed
Start: unspec.
End: 8-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Sea squirt
Ciona savignyi
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (13X)
Completed
Start: 11-2003
End: 11-2003
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Dog
Canis familiaris
 Mammal Genome Draft Assembly,
SNP discovery,
Other,
Improved Genome
Whole Genome Shotgun (6.5X) BAC-based Shotgun (or other large clone)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
American Kennel Club
Rhizopus
Rhizopus oryzae RA99-880
 Fungus Genome Draft Assembly
Whole Genome Shotgun (14X)
Completed
Start: 11-2004
End: 8-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Corn Smut Disease
Ustilago maydis 521
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 7-2003
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 2, 4, 7, Y Other,
Unspecified
Other
Start: 5-2006
End: 12-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 2, 7, 21 SNP discovery
Whole Genome Shotgun (1X)
Start: 7-2003
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Chicken
Gallus gallus
 Bird Genome Finished region
Whole Genome Shotgun (6X) Finishing
Start: 8-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
USDA (URL)
Human
Homo sapiens
 Mammal All chromosomes - segmental duplications Finished
BAC-based Shotgun (or other large clone) Finishing
Start: unspec.
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Mouse
Mus musculus
 Mammal Chr Y Finished region
BAC-based Shotgun (or other large clone) Whole Genome Shotgun Finishing
Start: 12-2006
End: 12-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Nematode
Caenorhabditis briggsae
 Invertebrate Animal Genome Improved Draft
Whole Genome Shotgun
Start: 12-2004
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces bayanus
 Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces mikatae
 Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces kudriavzevii
 Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces castellii
 Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces kluyveri
 Fungus Genome Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (10X)
Start: 12-2004
End: 6-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes
 Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes
 Mammal Chr 7, Y Finished
BAC-based Shotgun (or other large clone) Finishing
Start: 6-2004
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Salmon
Salmo salar
 Fish 4 Mb Unspecified
BAC-based Shotgun (or other large clone)
Start: 2005
End: unspec.
Project URL
BCGSC (Canada)
(URL)
NHGRI (Canada) (URL)
Genome Canada (URL)
Chimpanzee
Pan troglodytes
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Orangutan
Pongo pygmaeus pygmaeus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Baboon
Papio hamadryas
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Monkey, Vervet
Cercopithecus aethiops
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Pig, Wild
Sus scrofa
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Horse
Equus caballus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Bovine
Bos taurus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Cat
Felis catus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Dog
Canis familiaris
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Bat, Jamaican Fruit-Eating
Artibeus jamaicensis
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Bat, Short-tailed Fruit
Carollia perspicillata
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Rabbit
Oryctolagus cuniculus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Hedgehog
Atelerix albiventris
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Mouse
Mus musculus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Completed
Start: 8-2003
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Rat
Rattus norvegicus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Completed
Start: 8-2003
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Platypus
Ornithorhynchus anatinus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Opossum
Monodelphis domestica
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Dunnart
Sminthopsis crassicaudata
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Chicken
Gallus gallus
 Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Zebrafish
Danio rerio
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Pufferfish, Japanese
Takifugu rubripes
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Pufferfish, Spotted Green
Tetraodon nigroviridis
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila melanogaster
 Invertebrate Animal Genome Finished
Finishing
Completed
Start: 1-2001
End: unspec.
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
NIGMS (URL)
NCI (URL)
HHMI (URL)
Nematode
Caenorhabditis elegans
 Invertebrate Animal Genome Finished
Whole Genome Shotgun Finishing
Completed
Start: 1-2001
End: unspec.
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila erecta
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 9-2004
End: 3-2005
ABC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila virilis
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 5-2004
End: 9-2004
ABC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila mojavensis
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 8-2004
End: 11-2004
ABC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila ananassae
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 6-2004
End: 6-2004
ABC (USA)
(URL)
NHGRI (USA) (URL)
Dog
Canis familiaris
 Mammal Genome Draft Assembly
BAC-end sequences (10X)
Completed
Start: 1-2003
End: 1-2003
ABC (USA)
(URL)
NHGRI (USA) (URL)
Bovine
Bos taurus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 11-2006
End: 2007
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
USDA (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Macaque, Rhesus
Macaca mulatta
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 8-2004
End: unspec.
TIGR (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila willistoni
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7.5X)
Start: 2005
End: unspec.
TIGR (USA)
(URL)
NHGRI (USA) (URL)
Opossum
Monodelphis domestica
 Mammal Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (7X)
Completed
Start: 10-2004
End: 10-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila persimilis
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila sechellia
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 8-2005
End: 8-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Planarian
Schmidtea mediterranea
 Invertebrate Animal Genome Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (8X)
Start: 11-2003
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila simulans
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 12-2003
End: 4-2005
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Fruitfly
Drosophila yakuba
 Invertebrate Animal Genome Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (8X)
Completed
Start: 12-2003
End: 2-2006
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: unspec.
End: unspec.
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 15q14-21.3 Finished
BAC-based Shotgun (or other large clone) (8X) Finishing (1X)
Completed
Start: 1-2003
End: unspec.
ISB (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 1: 50.12 Mb Finished
BAC-based Shotgun (or other large clone) (8X) Finishing
Completed
Start: 4-2003
End: unspec.
UWGC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 3: 61.49 Mb Finished
BAC-based Shotgun (or other large clone) (8X) Finishing
Completed
Start: 4-2003
End: unspec.
UWGC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Chr 7: 17.19 Mb Finished
BAC-based Shotgun (or other large clone) (8X) Finishing
Completed
Start: 4-2003
End: unspec.
UWGC (USA)
(URL)
NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: unspec.
End: unspec.
JCVI (USA)
(URL)
NHGRI (USA) (URL)
Beetle, Red Flour
Tribolium castaneum
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X) BAC-based Shotgun (or other large clone) (0.5X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
USDA (URL)
Yeast
Candida guilliermondii ATCC6260
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Candida lusitaniae ATCC 42720
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Candida tropicalis MYA-3404
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Lodderomyces
Lodderomyces elongisporus NRRLYB-4239
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 10-2005
End: 6-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Chaetomium
Chaetomium globosum CBS 148.51
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Uncinocarpus
Uncinocarpus reesii 1704
 Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Completed
Start: unspec.
End: 11-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Cryptococcus
Cryptococcus neoformans sero B R265
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces cerevisiae RM11-1a
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 11-2004
End: 12-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Candida albicans WO-1
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 10-2005
End: 10-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 1-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Guinea pig
Cavia porcellus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 7-2005
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Elephant, African Savannah
Loxodonta africana
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) Whole Genome Shotgun (5X)
Start: 1-2005
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Rabbit
Oryctolagus cuniculus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) Whole Genome Shotgun (5X)
Start: 1-2005
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Tenrec
Echinops telfairi
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 5-2005
End: 5-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Lamprey, Sea
Petromyzon marinus
 Fish Genome BAC-end sequence,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6X)
Start: 3-2004
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Snail, Freshwater
Biomphalaria glabrata
 Invertebrate Animal Genome BAC-end sequence,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Wellcome Trust (URL)
The Wellcome Trust Sanger Institute is providing at least 40,000 ESTs for this project.
Polyp, Freshwater
Hydra magnipapillata
 Invertebrate Animal Genome Draft Assembly
(0.5X)
Start: 1-2005
End: unspec.
JCVI (USA)
(URL)
NHGRI (USA) (URL)
Ciliate
Oxytricha trifallax (macronucleus)
 Protist Whole chromosomes Draft Assembly,
Comparative-grade finished regions
Whole Chromosome Shotgun (4X)
Start: 11-2004
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Slime mold
Physarum polycephalum
 Invertebrate Animal Genome Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6X)
Start: 1-2005
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Cat
Felis catus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 8-2005
ABC (USA)
(URL)
NHGRI (USA) (URL)
Bovine
Bos taurus
 Mammal Selected regions Holstein breed SNP discovery
BAC-based Shotgun (or other large clone)
Start: 3-2006
End: 2006
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
USDA (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Mouse
Mus musculus
 Mammal Chr 6, 10 Finished region
Finishing
Completed
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Wallaby, Tammar
Macropus eugenii
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 6-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Australian Genome Research Facility Ltd. (AGRF) (URL) The Victorian State Government (URL) Brockhoff Foundation
Corn
Zea mays B73
 Plant Genome Draft Assembly,
Finished region
BAC-based Shotgun (or other large clone) (6X)
Start: 11-2005
End: 10-2008
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
NSF (URL)
USDOE (URL)
Joint project with NSF/USDA/DOE. Shotgun sequencing of Mo17 by the Joint Genome Institute.
Honey bee
Apis mellifera
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 6-2005
End: 7-2006
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
USDA (URL)
Orangutan
Pongo pygmaeus pygmaeus
 Mammal Genome Genome assembly,
Finished region,
SNP discovery
Whole Genome Shotgun (3X)
Start: 2-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Bat, Horseshoe
Rhinolophus ferrumequinum
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Galago/Bush Baby
Otolemur garnetti
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Stickleback, Three-spined
Gasterosteus aculeatus
 Fish Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (9X)
Completed
Start: unspec.
End: 2-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Mold, Gray
Botrytis cinerea B05.10
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Syngenta
Glume blotch
Stagonospora nodorum SN15
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 1-2003
End: 5-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
GRDC (Australia)
Hedgehog, European
Erinaceus europeaus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 10-2005
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Galago/Bush Baby
Otolemur garnetti
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 12-2005
End: 1-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Schizzosaccharomyces japonicus yFS275
 Fungus Genome Draft Assembly
Whole Genome Shotgun (9X)
Completed
Start: 8-2005
End: 10-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Schizosaccharomyces octosporus yFS286
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 7-2005
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Squirrel, Ground
Spermophilus tridecemlineatus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 10-2005
End: 6-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Shrew, Tree
Tupaia belangeri
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 9-2005
End: 7-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Genome (NA18517) SNP discovery,
Other,
Structural variation
Whole Genome Shotgun (0.5X)
Completed
Start: 6-2005
End: 9-2005
ABC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Genome (NA18507) SNP discovery,
Other,
Structural variatino
Whole Genome Shotgun (0.5X)
Completed
Start: 9-2005
End: 2-2006
ABC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Genome (NA18956) SNP discovery,
Other,
Structural variation
Whole Genome Shotgun (0.5X)
Completed
Start: 1-2006
End: 3-2006
ABC (USA)
(URL)
NHGRI (USA) (URL)
Human
Homo sapiens
 Mammal Genome (NA19240) SNP discovery,
Other,
Structural Variation
Whole Genome Shotgun (0.5X)
Start: 3-2006
End: 5-2006
ABC (USA)
(URL)
NHGRI (USA) (URL)
Lemur, Gray Mouse
Microcebus murinus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Lizard, Anole
Anolis carolinensis
 Reptile Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 7-2006
End: 7-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Pika
Ochotona princeps
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 8-2006
End: 4-2007
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Lemur, Gray Mouse
Microcebus murinus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 9-2006
End: 4-2007
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Horse
Equus caballus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 2-2006
End: 8-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Bat, Little Brown
Myotis lucifugus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) Whole Genome Shotgun (5X)
Start: 8-2005
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Rat
Rattus norvegicus
 Mammal Genome Finished region,
SNP discovery
Other
Start: 4-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Honey bee
Apis mellifera
 Invertebrate Animal Genome Draft Assembly,
Finished region
Other
Start: 6-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Amoeba
Acanthamoeba castellanii
 Protist Genome Draft Assembly
Whole Genome Shotgun (20X)
Start: 5-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Hyrax
Procavia capensis
 Mammal Genome Whole-genome Map
Whole Genome Shotgun (2X)
Start: 3-2006
End: unspec.
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Acorn worm
Saccoglossus kowalevskii
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 2-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Wasp, Parasitoid
Nasonia longicornis
 Invertebrate Animal Genome Whole-genome Map,
SNP discovery
Whole Genome Shotgun
Start: 8-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Wasp, Parasitoid
Nasonia giraulti
 Invertebrate Animal Genome Whole-genome Map,
SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Wasp, Parasitoid
Nasonia vitripennis
 Invertebrate Animal Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Aphid, Pea
Buchnera aphidicola str. APS - Acyrthosiphon pisum
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 5-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Alligator
Alligator mississippiensis
 Reptile Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Bat, Little Brown
Myotis lucifugus
 Mammal Selected Regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Lemur, Black
Eulemur macaco macaco
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Condor, California
Gymnogyps californianus
 Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Zebrafinch
Taeniopygia guttata
 Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Wallaby, Tammar
Macropus eugenii
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Tuatara
Sphenodon punctatus
 Reptile Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Tortoise, Desert
Gopherus agassizii
 Reptile Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Tenrec
Echinops telfairi
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Stickleback, Three-spined
Gasterosteus aculeatus
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Squirrel, Thirteen-lined Ground
Spermophilus tridecemlineatus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Skate, Little
Leucoraja erinacea
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Shrew, European common
Sorex araneus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Sheep
Ovis aries
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Salmon
Salmo salar
 Fish Seleced regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Pufferfish, Southern
Sphoeroides nephelus
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Catfish, Channel
Ictalurus punctatus
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Muntjac, Chinese
Muntiacus reevesi
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Shark, Dogfish (spiny)
Squalus acanthias
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Dusky titi
Callicebus moloch
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Echidna, Australian
Tachyglossus aculeatus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Elephant, African
Loxodonta africana
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Emu
Dromaius novaehollandiae
 Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Ferret
Mustela furo
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Frog, South African clawed
Xenopus tropicalis
 Amphibian Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Gibbon
Nomascus leucogenys leucogenys
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Gorilla
Gorilla gorilla gorilla
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Guinea pig
Cavia porcellus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Lemur, ring-tailed
Lemur catta
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Leopard, Clouded
neofelis nebulosa
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Monkey, Bolivian squirrel
Saimiri boliviensis boliviensis
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Monkey, Black-handed spider
Ateles geoffroyi
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Monkey, Colobus
Colobus guereza
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Monkey, Owl
Aotus nancymaae
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Muntjak, Indian
Muntiacus muntjak vaginalis
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Shark, Nurse
Ginglymostoma cirratum
 Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Opossum, North American
Didelphis virginiana
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Turkey
Meleagris gallopavo
 Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Cat
Felis catus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 1-2008
End: 5-2008
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Shrew, Tree
Tupaia belangeri
 Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 9-2007
End: 3-2008
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Orangutan
Pongo pygmaeus pygmaeus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 6-2006
End: 2-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Zebrafinch
Taeniopygia guttata
 Bird Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 5-2006
End: 10-2007
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Bovine
Bos taurus
 Mammal Genomes of 8 breeds SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
USDA (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Dolphin, Bottlenose
Tursiops truncatus
 Mammal Genome Whole-genome Map
Whole Genome Shotgun (2.5X)
Start: 7-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Kangaroo rat
Dipodomys ordii
 Mammal Genome Whole-genome Map
Whole Genome Shotgun (2X)
Start: 8-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Megabat
Pteropus vampyrus
 Mammal Genome Whole-genome Map
Whole Genome Shotgun (2X)
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 10-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Sea urchin
Strongylocentrotus purpuratus
 Invertebrate Animal Genome Whole-genome Map,
SNP discovery,
Comparative-grade finished regions
Upgrade
Start: 2007
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Gibbon, Northern white-cheeked
Nomascuc leucogenys
 Mammal Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 2007
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHGRI (USA) (URL)
Sloth
Choloepus hoffmanni
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 6-2007
End: 12-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Pangolin, Chinese
Manis pentadactyla
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 7-2007
End: 1-2008
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Colugo
Cynocephalus variegatus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 6-2007
End: 2-2008
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Alpaca
Vicugna pacos
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 8-2007
End: 12-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Platypus
Ornithorhynchus anatinus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 12-2006
End: 4-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Megabat
Pteropus vampyrus
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Hyrax
Procavia capensis
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Shrew, Tree
Tupaia belangeri
 Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA)
(URL)
NHGRI (USA) (URL)
Tarsier
Tarsius syrichta
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 5-2007
End: 4-2008
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Mosquito
Anopheles gambiae M
 Invertebrate Animal Genome BAC-end sequence,
Draft Assembly
Whole Genome Shotgun (8X) BAC end sequencing (0.5X)
Start: 6-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Sandfly-Leishmania vector
Phlebotomus papatasi
 Invertebrate Animal Genome BAC-end sequence,
Draft Assembly
Whole Genome Shotgun (2X) BAC end sequencing (0.5X) EST and 454 cDNA
Start: 1-2007
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Nematode
Pristionchus pacificus var California
 Invertebrate Animal Genome BAC-end sequence,
Draft Assembly
Whole Genome Shotgun (9X)
Start: 8-2004
End: 2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Genome Canada (URL)
Trichina worm
Trichinella spiralis
 Invertebrate Animal Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
ESTs
Whole Genome Shotgun (8X) Automated sequence improvement BAC fingerprint map, BAC end sequences, and ESTs (0.5X)
Start: 1-2005
End: 6-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus
 Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta
 Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Rat
Rattus norvegicus
 Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Opossum
Monodelphis domestica
 Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Bovine
Bos taurus
 Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 5-2006
End: 4-2007
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Human gut microbiome-100 organisms
Bacteriodetes and Firmicutes
 Invertebrate Animal Whole genomes Draft Assembly,
Comparative-grade finished regions
Whole Genome Shotgun (4X) 454 sequence (15X) automated and some manual sequence improvement
Start: 4-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Nematode
Caenorhabditis remanei
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (9X)
Start: 2-2004
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Nematode
Caenorhabditis brenneri
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (9X)
Start: 1-2005
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Nematode
Caenorhabditis japonia
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (9X)
Start: 9-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Nematode
Heterorhabditis bacteriophora
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 12-2005
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Kissing bug
Rhodnius prolixus
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) automated, primer-directed sequence improvement
Start: 11-2005
End: unspec.
Project URL
WUGSC (USA)
(URL)
NHGRI (USA) (URL)
Acanthocoepis
Acanthocoepis sp.
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Stephanoeca
Stephanoeca sp.
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Allomyces
Allomyces macrogynus ATCC 38327
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Amastigomonas
Amastigomonas sp. ATCC 50062
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Amoebidium
Amoebidium parasiticum JAP-7-2
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Chytridiomycosis
Batrachochytrium dendrobatidis JEL423
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 10-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Capsaspora
Capsaspora owczarzaki ATCC 30864
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Valley Fever
Coccidioides immitis RS
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 3-2004
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Cat
Felis catus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Darling's Disease
Histoplasma capsulatum NAm1
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: unspec.
End: 8-2005
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Kluyveromyces waltii NCYC 2644
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Mortierella
Mortierella verticillata NRRL 6337
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Nuclearia
Nuclearia simplex CCAP 1552/2
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Pneumonia, Mouse
Pneumocystis murina
 Fungus Genome Draft Assembly
Other
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Proterospongia
Proterospongia sp. ATCC 50818
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces bayanus MCYC 623-C857001
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces mikatae IFO1812
 Fish Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Yeast
Saccharomyces paradoxus NRRL Y-17217
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Sphaeroforma
Sphaeroforma arctica JP610
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Spizellomyces
Spizellomyces punctatus DAOM BR117
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Ringworm, Horse
Trichophyton equinum CBS127.97
 Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Tinea pedia
Trichophyton rubrum CBS118892
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Trichophyton
Trichophyton tonsurans CBS112818
 Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Common Shrew, European
Sorex araneus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 9-2005
End: 6-2006
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Coelacanth
Latimeria chalumnae
 Fish Genome Draft Assembly
Whole Genome Shotgun
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NHGRI (USA) (URL)
Rat
Rattus norvegicus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (5X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 1-2003
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
NHLBI (USA) (URL)
NHGRI (URL)
Histoplasma
Histoplasma capsulatum G217B
 Fungus Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (13X)
Start: 9-2003
End: 6-2007
Project URL
WUGSC (USA)
(URL)
NIAID (USA) (URL)
Histoplasma
Histoplasma capsulatum G186AR
 Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 9-2003
End: 6-2007
Project URL
WUGSC (USA)
(URL)
NIAID (USA) (URL)
Mosquito
Anopheles gambiae
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2001
End: 3-2002
Project URL
Genoscope (France)
(URL)
NIAID (France) (URL)
French Ministry of Research, World Health Organization
Mosquito
Aedes aegyptii
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 10-2005
End: 7-2006
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Mosquito
Aedes aegyptii
 Invertebrate Animal Genome
BAC end sequencing
Start: 2005
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Mosquito
Aedes aegyptii
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun
Start: unspec.
End: unspec.
TIGR (USA)
(URL)
NIAID (USA) (URL)
Trypanosome
Trypanosoma cruzi
 Protist Genome Draft Assembly,
Finished region
Whole Genome Shotgun
Completed
Start: 4-2005
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Human schistosomiasis parasite
Schistosoma mansoni
 Protist Genome Draft Assembly
Whole Genome Shotgun
Start: 4-2005
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Wellcome Trust (URL)
Toxoplasma
Toxoplasma gondii
 Protist Genome Draft Assembly
Whole Genome Shotgun
Start: unspec.
End: unspec.
TIGR (USA)
(URL)
NIAID (USA) (URL)
Nematode, Parasitic
Brugia malayi
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 10-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Mouse malaria parasite
Plasmodium yoelii
 Protist Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
USDoD
Entamoeba
Entamoeba histolytica
 Protist Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Wellcome Trust (URL)
Entamoeba
Entamoeba dispar
 Protist Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Wellcome Trust (URL)
Entamoeba
Entamoeba invadens
 Protist Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Wellcome Trust (URL)
Cryptococcus
Cryptococcus neoformans JEC21
 Fungus Genome Finished
Whole Genome Shotgun Finishing
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Cryptococcus
Cryptococcus neoformans B-3501A
 Protist Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Trypanosome
Trypanosoma brucei
 Protist Chr 2,3,4,5,6,7,8 Draft Assembly
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Plasmodium
Plasmodium vivax
 Protist Genome
Finishing (10X)
Completed
Start: 12-2001
End: 3-2007
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Burroughs Wellcome Fund, USDoD
Mouse malaria parasite
Plasmodium yoelii
 Protist Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 1-2001
End: unspec.
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
USDoD
Human trichomoniasis parasite
Trichomonas vaginalis
 Protist Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 10-2002
End: 4-2006
Project URL
TIGR (USA)
(URL)
NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum HB3
 Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2005
End: 2-2006
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum Dd2
 Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2005
End: 8-2006
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Mosquito
Culex pipiens quinquefasciatus JHB
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: unspec.
End: 3-2007
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Tick
Ixodes scapularis Wikel
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 2-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Dimorphic fungus (Ascomycete)
Blastomyces dermatitidis
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 3-2004
End: 5-2007
Project URL
WUGSC (USA)
(URL)
NIAID (USA) (URL)
Aspergillus
Aspergillus terreus NIH 2624
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 12-2005
End: 11-2006
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Blastomycosis
Blastomyces dermatitidis SLH#14081
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Blastomycosis
Blastomyces dermatitidis ER-3
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides immitis RS
 Fungus Genome Finished genome
Whole Genome Shotgun (4X) Finishing
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides immitis H538.4
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 1-2006
End: 7-2006
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides immitis RMSCC 2394
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2006
End: 10-2006
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides immitis RMSCC 3703
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 1-2006
End: 5-2007
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii Silveria
 Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Completed
Start: 1-2006
End: 6-2007
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 2133
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2006
End: 6-2007
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 3488
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2006
End: 5-2006
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 1037
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 1038
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 1040
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: 1-2007
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 3700
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 1-2006
End: 5-2007
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii CPA 0001
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii CPA 0020
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii CPA 0066
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Darling's Disease
Histoplasma capsulatum H88
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Darling's Disease
Histoplasma capsulatum H143
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Darling's Disease
Histoplasma capsulatum G186AR
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Lacazia
Lacazia loboi EDM7
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Microsporum
Microsporum canis CBS113480
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: 1-2007
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Microsporum
Microsporum gypseum CBS118893
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Paracoccidioidomycosis
Paracoccidioides brasiliensis Pb18
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Paracoccidioidomycosis
Paracoccidioides brasiliensis Pb03
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Paracoccidioidomycosis
Paracoccidioides brasiliensis Pb01
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum IGH-CR14
 Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum JDP8
 Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum RAJ116
 Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum 87_239
 Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Plasmodium, Chimpanzee
Plasmodium reichenowi
 Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NIAID (USA) (URL)
Ciliate
Tetrahymena thermophila
 Protist Macronuclear Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 2-2005
End: unspec.
Project URL
TIGR (USA)
(URL)
NIGMS (USA) (URL)
NSF (URL)
Fruitfly
Drosophila melanogaster
 Invertebrate Animal Genome Finished
Finishing
Completed
Start: 1-2001
End: unspec.
BCM-HGSC (USA)
(URL)
NIGMS (USA) (URL)
NHGRI (URL)
NCI (URL)
HHMI (URL)
Cryptococcus
Cryptococcus neoformans JEC21
 Fungus Genome BAC-end sequence
BAC-end sequencing
Completed
Start: 1-2003
End: unspec.
Project URL
BCGSC (Canada)
(URL)
NSERC (Canada) (URL)
Cryptococcus
Cryptococcus neoformans H99
 Fungus Genome BAC-end sequence
BAC-end sequencing
Completed
Start: 1-2003
End: unspec.
Project URL
BCGSC (Canada)
(URL)
NSERC (Canada) (URL)
Rice blast
Magnaporthe grisea 70-15
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (7X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Neurospora
Neurospora crassa
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (10X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Sudden Oak Death
Phytophthora ramorum
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome Unspecified
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Rice
Oryza sativa japonica
 Plant Genome Unspecified
Whole Genome Shotgun MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Ciliate
Tetrahymena thermophila
 Protist Macronuclear Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 2-2005
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
NIGMS (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome
Whole Genome Shotgun (5X) BAC-end sequencing
Start: 8-2004
End: unspec.
DOE - JGI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Neurospora
Neurospora crassa
 Fungus Telomeres (2.4Mb) High quality sequence
Unknown
Start: 9-2003
End: unspec.
Project URL
Multiple Groups ()
(URL)
NSF (URL)
Rice blast
Magnaporthe grisea 70-15
 Fungus Telomeres (2.4Mb) High quality sequence
Unknown
Start: 9-2003
End: unspec.
Multiple Groups ()
(URL)
NSF (URL)
Nosema
Nosema locustae
 Fungus Genome Unspecified
Whole Genome Shotgun (3X)
Start: 9-2005
End: unspec.
Project URL
Multiple Groups ()
(URL)
NSF (URL)
Corn
Zea mays B73
 Plant Gene-rich regions Other,
assembled onto maize and rice genomes
1M reads
Start: 8-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
Corn
Zea mays B73
 Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (10X)
Start: 8-2004
End: unspec.
Multiple Groups ()
(URL)
NSF (URL)
Corn
Zea mays B73
 Plant Genome BAC-end sequence
400, 000 BAC-end sequencing
Start: 8-2004
End: unspec.
Multiple Groups ()
(URL)
NSF (URL)
Corn
Zea mays B73
 Plant Genome pilot project
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF
Corn
Zea mays B73
 Plant Genome pilot project
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF
Sorghum
Sorghum vulgare
 Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF Comparative genomics between maize, sorghum, and rice
Rice
Oryza sativa japonica
 Plant Genome Finished sequence
BAC-based Shotgun (or other large clone) (10X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
USDA (URL)
USDOE (URL)
NSF, USDA, USDOE, Rutgers University, other countries
Legume
Medicago truncatula
 Plant Euchromatic Gene-Rich Regions Genome structure and Gene discovery
BAC-based Shotgun (or other large clone)
Start: 2006
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
EU, BBSRC, INRA
Rice
Oryza sativa japonica
 Plant Chr 3, 10, 11
BAC-based Shotgun (or other large clone)
Start: 12-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Parasitic Ciliate
Ichthyophthirius multifiliis
 Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2007
End: 11-2009
CUCVM (USA)
(URL)
NSF (USA) (URL)
Parasitic alveolate
Perkinsus marinus
 Protist Genome Draft Assembly
Whole Genome Shotgun (1X)
Start: 8-2005
End: unspec.
TIGR (USA)
(URL)
NSF (USA) (URL)
Tomato
Lycopersicon esculentum
 Plant Genome Other
BAC-based Shotgun (or other large clone) (8X)
Start: 9-2004
End: unspec.
Project URL
Multiple Groups ()
(URL)
NSF (URL)
Souces of funding include Korea , China, UK, India, Spain, Netherlands, France, Japan, and Italy.
Corn
Zea mays B73
 Plant Genome Draft Assembly,
Finished region
BAC-based Shotgun (or other large clone) (6X)
Start: 11-2005
End: 10-2008
Project URL
WUGSC (USA)
(URL)
NSF (USA) (URL)
NHGRI (URL)
USDOE (URL)
Joint project with NSF/USDA/DOE. Shotgun sequencing of Mo17 by the Joint Genome Institute.
Downy Mildew
Hyaloperonospora parasitica Emoy2 strain
 Invertebrate Animal Genome Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (8X)
Start: 9-2004
End: 8-2007
WUGSC (USA)
(URL)
NSF (USA) (URL)
Legume
Medicago truncatula
 Plant Genome BAC-end sequence
BAC-based Shotgun (or other large clone) (1X)
Completed
Start: 1-2001
End: 1-2003
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF, Noble Foundation, EU
Corn
Zea mays B73
 Plant Genome gene-enrichment
Methyl-filtration (0.5X)
Completed
Start: 1-2004
End: 1-2001
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
USDOE (URL)
NSF maize pilot project
Mold, White
Sclerotinia sclerotiorum 1980
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Wheat stem rust
Puccinia graminis f.sp. triciti CRL75-36-700-3
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 1-2007
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
Corn
Zea mays
 Plant Chromosome 10 Draft Assembly
Whole Chromosome Shotgun (6X)
Start: 11-2005
End: 10-2007
JCVI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
Rot (necrotrophic fungus)
Alternaria brassicicola
 Fungus Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6.5X) BAC fingerprint map; BAC end sequence (0.5X) ESTs and 454 cDNA
Start: 9-2004
End: 8-2007
Project URL
WUGSC (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Leaf Blight, Maize
Colletotrichum graminicola M1.001
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 1-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Wheat Head Blight
Fusarium graminearum PH-1
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Panama Disease
Fusarium oxysporum FGSC 4286
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 3-2006
End: 2-2007
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
Seed Rot, Maize
Fusarium verticillioides 7600
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X) Whole Genome Shotgun (4X)
Completed
Start: 1-2007
End: 1-2007
BI/MIT (USA)
(URL)
NSF (USA) (URL)
Syngenta: 4X WGS
Potato Late Blight
Phytophthora infestans T30-4
 Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (8X)
Completed
Start: 11-2003
End: unspec.
BI/MIT (USA)
(URL)
NSF (USA) (URL)
Wheat Tan Spot
Pyrenophora tritici-repentis Pt-1C-BFP
 Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: 3-2007
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Soybean rust (New World)
Phakopsora meibomiae
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
USDOE (URL)
Rice blast
Magnaporthe grisea 70-15
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (7X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Neurospora
Neurospora crassa
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (10X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Chicken
Gallus gallus
 Bird Genome Finished region
Whole Genome Shotgun (6X) Finishing
Start: 8-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Soybean rust (Old World)
Phakopsora pachyrhizi
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
USDOE (URL)
Sudden Oak Death
Phytophthora ramorum
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome Unspecified
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Rice
Oryza sativa japonica
 Plant Genome Unspecified
Whole Genome Shotgun MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome
Whole Genome Shotgun (5X) BAC-end sequencing
Start: 8-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Rice
Oryza sativa japonica
 Plant Genome Finished sequence
BAC-based Shotgun (or other large clone) (10X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
USDA (International) (URL)
NSF (URL)
USDOE (URL)
NSF, USDA, USDOE, Rutgers University, other countries
Bovine
Bos taurus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 11-2006
End: 2007
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Beetle, Red Flour
Tribolium castaneum
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X) BAC-based Shotgun (or other large clone) (0.5X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Rice
Oryza sativa japonica
 Plant Chr 3, 10, 11
BAC-based Shotgun (or other large clone)
Start: 12-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Babesia
Babesia bovis
 Protist Genome Finished
Whole Genome Shotgun Finishing
Start: 12-2005
End: unspec.
TIGR (USA)
(URL)
USDA (USA) (URL)
Bovine
Bos taurus
 Mammal Selected regions Holstein breed SNP discovery
BAC-based Shotgun (or other large clone)
Start: 3-2006
End: 2006
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Honey bee
Apis mellifera
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 6-2005
End: 7-2006
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Mold, White
Sclerotinia sclerotiorum 1980
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Corn
Zea mays
 Plant Chromosome 10 Draft Assembly
Whole Chromosome Shotgun (6X)
Start: 11-2005
End: 10-2007
JCVI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
Bovine
Bos taurus
 Mammal Genomes of 8 breeds SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Pig, Wild
Sus scrofa
 Mammal Genome Draft Assembly,
Finished region,
SNP discovery
BAC-based Shotgun (or other large clone) (3X) Whole genome shotgun to 6X of SSC 4, 7 & 14 (3X)
Start: 4-2006
End: 12-2008
Project URL
SI (UK)
(URL)
USDA (UK) (URL)
Wellcome Trust (URL)
National Pork Board (USA); Iowa Pork Producers Association (USA); Iowa State University (USA); North Carolina Pork Council (USA); North Carolina Agriculturaal Research Service (USA); Korean National Livestock Research Institute; The Institute for Pig Genetics (Netherlands); National Institute of Agrobiological Science (Japan); European Union Cutting Edge Genomics for Sustainable Animal Breeding
Rot (necrotrophic fungus)
Alternaria brassicicola
 Fungus Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6.5X) BAC fingerprint map; BAC end sequence (0.5X) ESTs and 454 cDNA
Start: 9-2004
End: 8-2007
Project URL
WUGSC (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Leaf Blight, Maize
Colletotrichum graminicola M1.001
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 1-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Wheat Head Blight
Fusarium graminearum PH-1
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Wheat Tan Spot
Pyrenophora tritici-repentis Pt-1C-BFP
 Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: 3-2007
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Verticillium Wilts
Verticillium dahliae VdLs.17
 Fungus Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (7X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
Verticillium Wilts
Verticillium albo-atrum VaMs.102
 Fungus Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
Verticillium Wilts
Verticillium longisporum VdBob.70
 Fungus Genome Other,
Comparative Analysis
Whole Genome Shotgun (0.5X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
Soybean rust (New World)
Phakopsora meibomiae
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
Human
Homo sapiens
 Mammal Chr 5, 16, 19 Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Pufferfish, Japanese
Takifugu rubripes
 Fish Genome Finished
Whole Genome Shotgun Finishing (0.5X)
Start: 6-2005
End: unspec.
Project URL
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Soybean rust (Old World)
Phakopsora pachyrhizi
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
Sudden Oak Death
Phytophthora ramorum
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
NSF (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome Unspecified
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
NSF (URL)
Rice
Oryza sativa japonica
 Plant Genome Unspecified
Whole Genome Shotgun MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
NSF (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome
Whole Genome Shotgun (5X) BAC-end sequencing
Start: 8-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
NSF (URL)
Rice
Oryza sativa japonica
 Plant Genome Finished sequence
BAC-based Shotgun (or other large clone) (10X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
USDOE (International) (URL)
USDA (URL)
NSF (URL)
NSF, USDA, USDOE, Rutgers University, other countries
Lancelet, Florida
Branchiostoma floridae
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Flea, water
Daphnia pulex
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Choanoflagellate
Monosiga brevicollis
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Algae, Green
Chlamydomonas reinhardtii
 Plant Genome Draft Assembly,
Other,
Automated annotation and community curation
Whole Genome Shotgun (8X)
Start: 12-2003
End: 5-2007
Project URL
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Poplar
Populus spp.
 Plant Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 6-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Sea squirt
Ciona intestinalis
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 12-2002
End: unspec.
Project URL
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Frog, South African clawed
Xenopus tropicalis
 Amphibian Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 12-2004
End: unspec.
Project URL
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Sea anemone
Nematostella vectensis
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
White rot
Phanerochaete chrysosporium
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2003
End: unspec.
Project URL
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Diatom, Ocean
Thalassiosira pseudonana
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 6-2003
End: unspec.
Project URL
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Trichoderma
Trichoderma reesei
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Phytoplankton
Emiliania huxleyi
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Diatom, Pennate
Phaeodactylum tricornutum
 Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Phytoplankton
Ostreococcus sp.
 Plant Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDOE (USA) (URL)
Rice
Oryza sativa japonica
 Plant Chr 3, 10, 11
BAC-based Shotgun (or other large clone)
Start: 12-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
NSF (URL)
Corn
Zea mays B73
 Plant Genome Draft Assembly,
Finished region
BAC-based Shotgun (or other large clone) (6X)
Start: 11-2005
End: 10-2008
Project URL
WUGSC (USA)
(URL)
USDOE (USA) (URL)
NHGRI (URL)
NSF (URL)
Joint project with NSF/USDA/DOE. Shotgun sequencing of Mo17 by the Joint Genome Institute.
Corn
Zea mays B73
 Plant Genome gene-enrichment
Methyl-filtration (0.5X)
Completed
Start: 1-2004
End: 1-2001
Project URL
PGSP (International)
(URL)
USDOE (International) (URL)
NSF (URL)
NSF maize pilot project
Corn
Zea mays
 Plant Chromosome 10 Draft Assembly
Whole Chromosome Shotgun (6X)
Start: 11-2005
End: 10-2007
JCVI (USA)
(URL)
USDOE (USA) (URL)
USDA (URL)
NSF (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
Human
Homo sapiens
 Mammal Chr 1, 6, 9, 10, 13, 16, 20, 22, X Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Mouse
Mus musculus
 Mammal Chr 2, 4, 11, X Finished region
Finishing
Completed
Start: 1-2004
End: unspec.
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Human
Homo sapiens
 Mammal Genome SNP discovery
Whole Chromosome Shotgun (1X)
Start: 5-2003
End: unspec.
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Nematode
Caenorhabditis elegans
 Invertebrate Animal Genome Finished
Whole Genome Shotgun Finishing
Completed
Start: 1-2001
End: unspec.
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Zebrafish
Danio rerio
 Fish Genome Draft Assembly
Whole Genome Shotgun BAC-based Shotgun (or other large clone)
Start: 12-2005
End: unspec.
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Nematode
Caenorhabditis briggsae
 Invertebrate Animal Genome Other,
Unspecified
BAC-based Shotgun (or other large clone)
Start: unspec.
End: unspec.
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Human schistosomiasis parasite
Schistosoma mansoni
 Protist Genome Draft Assembly
Whole Genome Shotgun
Start: 4-2005
End: unspec.
Project URL
TIGR (USA)
(URL)
Wellcome Trust (USA) (URL)
NIAID (URL)
Entamoeba
Entamoeba histolytica
 Protist Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
Wellcome Trust (USA) (URL)
NIAID (URL)
Entamoeba
Entamoeba dispar
 Protist Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
Wellcome Trust (USA) (URL)
NIAID (URL)
Entamoeba
Entamoeba invadens
 Protist Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA)
(URL)
Wellcome Trust (USA) (URL)
NIAID (URL)
Snail, Freshwater
Biomphalaria glabrata
 Invertebrate Animal Genome BAC-end sequence,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
Wellcome Trust (USA) (URL)
NHGRI (URL)
The Wellcome Trust Sanger Institute is providing at least 40,000 ESTs for this project.
Pig, Wild
Sus scrofa
 Mammal Genome Draft Assembly,
Finished region,
SNP discovery
BAC-based Shotgun (or other large clone) (3X) Whole genome shotgun to 6X of SSC 4, 7 & 14 (3X)
Start: 4-2006
End: 12-2008
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
USDA (URL)
National Pork Board (USA); Iowa Pork Producers Association (USA); Iowa State University (USA); North Carolina Pork Council (USA); North Carolina Agriculturaal Research Service (USA); Korean National Livestock Research Institute; The Institute for Pig Genetics (Netherlands); National Institute of Agrobiological Science (Japan); European Union Cutting Edge Genomics for Sustainable Animal Breeding
Slime mold
Polysphondilium pallidum
 Protist whole genome Finished genome
Whole Genome Shotgun Finishing
Start: 3-2006
End: 12-2008
GGSAC (Germany)
(URL)
Wellcome Trust (Germany) (URL)
DFG (URL)
Gorilla
Gorilla gorilla gorilla
 Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 11-2006
End: unspec.
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Tomato
Solanum lycopersicum
 Plant chromosome 4 Finished region
Finishing
Start: 1-2006
End: 10-2008
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
BBSRC
Legume
Medicago truncatula
 Plant chromosome 3 Finished region
Whole Genome Shotgun Finishing
Start: unspec.
End: 2-2008
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
BBSRC, European Commission
Mouse
Mus musculus
 Mammal IDD1, IDD3.1, IDD4.1, IDD4.2, IDD4.2Q, IDD5.1, IDD5.3, IDD5.4, IDD6.1, IDD6.2, IDD6.3, IDD9.1, IDD9.1M, IDD9.2, IDD9.3, IDD10.1, IDD16.1, IDD18.1, IDD18.2 Finished region
Finishing
Start: unspec.
End: 11-2007
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Immune Tolerance Network
Large Roundworm
Ascaris lumbicoides
 Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: 1-2007
End: 1-2007
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Tapeworm
Echinococcus multiocularis
 Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: 2007
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Barber pole worm
Haemonchus contortus
 Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Hookworm
Nippostrongylus braziliensis
 Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Blood fluke
Shistosoma mansoni
 Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Threadworm
Strongyloides ratti
 Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Whipworm
Trichuris muris
 Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
SI (UK)
(URL)
Wellcome Trust (UK) (URL)
Human
Homo sapiens
 Mammal Long arm of Chr 14 Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: 1-2003
Project URL
Genoscope (France)
(URL)
 
Pufferfish, Spotted Green
Tetraodon nigroviridis
 Fish Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2001
End: 10-2004
Project URL
Genoscope (France)
(URL)
 
Kluyveromyces
Kluyveromyces lactis
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 5-2003
End: unspec.
Genoscope (France)
(URL)
 
Kluyveromyces
Kluyveromyces thermotolerans
 Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 5-2003
End: unspec.
Genoscope (France)
(URL)
 
Paramecium
Paramecium tetraurelia
 Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2004
End: unspec.
Project URL
Genoscope (France)
(URL)
 
Wine Grape
Vitis vinifera
 Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (12X)
Start: 12-2004
End: 12-2007
Project URL
Genoscope (France)
(URL)
 
CNRG (Consortium national de recherche en génomique) ANR (Agence nationale de la recherche)
Human
Homo sapiens
 Mammal Chr 11, 18p, 21 Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: 4-2003
Project URL
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Mustard weed
Arabidopsis thaliana
 Plant Genome Unspecified
MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA)
(URL)
 
Chimpanzee
Pan troglodytes
 Mammal Chromosome Y male-specific region Finished genome
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 12-2004
End: 7-2005
RIKEN (Japan)
(URL)
 
Chimpanzee
Pan troglodytes
 Mammal Genome Whole-genome Map
175,755 BAC-end sequences (1X)
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan)
(URL)
 
Mouse, Wild Japanese
Mus musculus molossinus
 Mammal Genome Whole-genome Map
337,471 BAC-end Sequences (1X)
Completed
Start: unspec.
End: unspec.
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Macaque, Japanese
Macaca fuscata
 Mammal Genome Whole-genome Map
167,159 BAC-end Sequences (1X)
Completed
Start: unspec.
End: unspec.
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Silkworm
Bombyx mori
 Invertebrate Animal Genome Draft Assembly
BAC-based Shotgun (or other large clone)
Completed
Start: 1-2001
End: unspec.
ILGP (International)
(URL)
 
Podospora
Podospora anserina
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 1-2001
End: 4-2005
Project URL
Genoscope (France)
(URL)
 
Pufferfish, Japanese
Takifugu rubripes
 Fish Selected genes Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (3X)
Start: 8-2004
End: unspec.
ISB (USA)
(URL)
 
Singapore Economic Development
Frog, South African clawed
Xenopus tropicalis
 Amphibian Developmental genes Other
BAC-based Shotgun (or other large clone) (6X)
Start: 12-2004
End: unspec.
ISB (USA)
(URL)
 
NICHD
Chimpanzee
Pan troglodytes
 Mammal Chr 22 Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: unspec.
RIKEN (Japan)
(URL)
 
Fruitfly
Drosophila simulans
 Invertebrate Animal Genome Whole-genome Map
16,110 BAC-end sequences (1X)
Completed
Start: 1-2001
End: 1-2001
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Fruitfly
Drosophila melanogaster
 Invertebrate Animal Genome Whole-genome Map
11,706 BAC-end Sequences (1X)
Completed
Start: 1-2001
End: 1-2001
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Fruitfly
Drosophila sechellia
 Invertebrate Animal Genome Whole-genome Map
15,251 BAC-end Sequences (1X)
Completed
Start: 1-2001
End: unspec.
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Fruitfly
Drosophila ananassae
 Invertebrate Animal Genome Whole-genome Map
16,047 BAC-end Sequences (1X)
Completed
Start: 1-2001
End: 1-2001
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Larvacean
Oikopleura dioica
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2004
End: unspec.
Project URL
Genoscope (France)
(URL)
 
Sars Center
Fruitfly
Drosophila grimshawi
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 11-2004
End: 6-2005
ABC (USA)
(URL)
 
Legume
Medicago truncatula
 Plant Chr 5 Draft Assembly
BAC-based Shotgun (or other large clone) (10X) Finishing
Start: 1-2004
End: unspec.
Genoscope (France)
(URL)
 
European Union
Corn
Zea mays B73
 Plant Genome BAC-end sequence
475,000 BAC-ends (8X)
Completed
Start: 1-2001
End: 5-2004
Project URL
PGSP (International)
(URL)
 
NSF
Corn
Zea mays B73
 Plant Genome Draft Assembly
Methyl-filtration (0.5X)
Completed
Start: 1-2004
End: 1-2001
PGSP (International)
(URL)
 
USDOE 300 Mb of total reads
Aphid, Pea
Buchnera aphidicola str. APS - Acyrthosiphon pisum
 Invertebrate Animal Genome Finished genome
Whole Genome Shotgun (7X) Finishing
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan)
(URL)
 
Fruitfly
Drosophila auraria
 Invertebrate Animal Genome BAC-end sequence
13,013 BAC-end sequences (1X)
Completed
Start: 1-2003
End: 1-2001
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Lancelet, Florida
Branchiostoma floridae
 Invertebrate Animal Genome Whole-genome Map
42,645 BAC-end sequences (1X)
Completed
Start: 1-2003
End: 1-2001
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Whale, False Killer
Pseudorca crassidens
 Mammal Genome Whole-genome Map
200,000 BAC-end sequences (1X)
Start: 2-2001
End: 3-2007
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Mouse
Mus musculus
 Mammal 1 Mb on chromosome 16q Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan)
(URL)
 
Mouse
Mus musculus
 Mammal 1 Mb on chromosome 7 Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan)
(URL)
 
Human
Homo sapiens
 Mammal Telomeres on all chromosomes Finished
Fosmid- and BAC-based Shotgun Finishing
Start: 12-2005
End: 12-2005
Project URL
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Yeast
Pichia sorbitophila
 Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: 3-2005
End: 3-2005
Genoscope (France)
(URL)
 
Yeast
Botrytis cinerea
 Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: 12-2004
End: 12-2004
Genoscope (France)
(URL)
 
Yeast
Zygosaccharomyces rouxii
 Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: 10-2004
End: 10-2004
Genoscope (France)
(URL)
 
Yeast
Debaryomyces hansenii
 Fungus Genome Finished region
Whole Genome Shotgun (10X) Finishing (0.5X)
Completed
Start: 1-2001
End: 5-2004
Genoscope (France)
(URL)
 
Fruitfly
Drosophila willistoni
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (1X)
Completed
Start: 9-2004
End: 6-2005
JCVI (USA)
(URL)
 
Marmoset, Common
Callithrix jacchus
 Mammal Genome Whole-genome Map
BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan)
(URL)
 
RIKEN-GSC
Dog
Canis familiaris
 Mammal Genome Whole-genome Map
200,000 BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan)
(URL)
 
Wallaby, Tammar
Macropus eugenii
 Mammal Chromosome X Whole-genome Map
20,000 Fosmid-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Platypus
Ornithorhynchus anatinus
 Mammal Genome Whole-genome Map
BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Wallaby, Tammar
Macropus eugenii
 Mammal Genome Whole-genome Map
BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan)
(URL)
 
MEXT (Japan)
Yeast
Saccharomyces cerevisiae EC1118
 Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 1-2006
End: 8-2006
Genoscope (France)
(URL)
 
Black truffle
Tuber melanosporum
 Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Start: 4-2006
End: unspec.
Genoscope (France)
(URL)
 
CNRG
Leptosphaeria maculans
Leptosphaeria maculans
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 1-2006
End: unspec.
Project URL
Genoscope (France)
(URL)
 
CNRG (Consortium National de Recherche en Génomique)
Algae, Brown
Ectocarpus silicosus
 Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 10-2004
End: unspec.
Project URL
Genoscope (France)
(URL)
 
CNRG (Consortium national de recherche en génomique)
Yarrowia
Yarrowia lipolytica
 Fungus Genome Finished genome
Whole Genome Shotgun (10X) Finishing (0.5X)
Completed
Start: 5-2003
End: 5-2005
Genoscope (France)
(URL)
 
CNRG (Consortium national de recherche en génomique)
Rice
Oryza sativa japonica
 Plant Chr 12 Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: 9-2004
Project URL
Genoscope (France)
(URL)
 
Algae, Green
Bathycoccus sp. (BAN7)
 Plant Genome Finished genome
Whole Genome Shotgun (12X) Finishing (0.5X)
Start: 10-2007
End: 12-2008
Genoscope (France)
(URL)
 
Consortium National de Recherche en Genomique (CNRG)
Wheat
Triticum aestivum
 Plant 20Mb on chromosome 3B Regional assembly,
Finished region
BAC-based Shotgun (or other large clone) (12X) Finishing
Start: 2-2007
End: unspec.
Genoscope (France)
(URL)
 
CNRG (National Consortium of Genomic Research)
Algae, Red
Chondrus crispus
 Plant Genome Draft Assembly
Whole Genome Shotgun (12X)
Start: 2-2007
End: 12-2009
Genoscope (France)
(URL)
 
CNRG (National Consortium of Genomic Research)
Blue stain fungus
Ophiostoma clavigerum
 Fungus Genome Finished genome
Whole Genome Shotgun (10X)
Start: 1-2007
End: 1-2008
BCGSC (Canada)
(URL)
 
Canadian Forest Service Canadian Ministry of Forestry and Range
 487 Organisms on Record.


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