Acanthocoepis sp.
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Saccoglossus kowalevskii
| Whole Genome Shotgun (7X) |
End: unspec.
Project URL
Ectocarpus silicosus
| Whole Genome Shotgun (10X) |
End: unspec.
Project URL
Bathycoccus sp. (BAN7)
| Whole Genome Shotgun (12X) | Finishing (0.5X) |
End: 12-2008
Chlamydomonas reinhardtii
Other,
Automated annotation and community curation
| Whole Genome Shotgun (8X) |
End: 5-2007
Project URL
Chondrus crispus
| Whole Genome Shotgun (12X) |
End: 12-2009
Alligator mississippiensis
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Allomyces macrogynus ATCC 38327
| Whole Genome Shotgun (8X) |
End: unspec.
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Vicugna pacos
| Whole Genome Shotgun (2X) |
End: 12-2007
Project URL
Amastigomonas sp. ATCC 50062
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Acanthamoeba castellanii
| Whole Genome Shotgun (20X) |
End: unspec.
Project URL
Amoebidium parasiticum JAP-7-2
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Buchnera aphidicola str. APS - Acyrthosiphon pisum
| Whole Genome Shotgun (7X) | Finishing |
Start: 1-2003
End: 1-2003
| Collaboration Notes [ close ] Univ Tokyo |
Buchnera aphidicola str. APS - Acyrthosiphon pisum
| Whole Genome Shotgun (6X) |
End: unspec.
Project URL
Dasypus novemcinctus
| Whole Genome Shotgun (2X) |
Start: 1-2005
End: 1-2005
Project URL
Dasypus novemcinctus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Dasypus novemcinctus
| Whole Genome Shotgun (4X) |
End: unspec.
Project URL
Arthroderma benhamiae
Finished region
| Whole Genome Shotgun (8X) |
End: 12-2008
Project URL
TKM (Thüringer Kultusministerium) http://www.thueringen.de/de/tkm; WGL (Wissenschaftsgemeinschaft Gottfried Wilhelm Leibniz) http://www.wgl.de; HKI (Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute) http://www.hki-jena.de
| Collaboration Notes [ close ] Leibniz Institute for Natural Product Research and Infection Biology - Hans-Knöll-Institute (HKI - coordinator); Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI); Friedrich Schiller University Jena - Institute for Microbiology, Department of Dermatology and Allergology (all Germany); Centre Hospitalier Universitaire Vaudois, Lausanne (Switzerland) |
Aspergillus nidulans FGSC-4A
| Whole Genome Shotgun (10X) |
Start: 2-2003
End: 2-2003
Project URL
| Collaboration Notes [ close ] Ron Morris, UMDNJ; Fungal Genome Initiative Steering Committee |
Aspergillus terreus NIH 2624
| Whole Genome Shotgun (10X) |
Start: 12-2005
End: 11-2006
Project URL
| Collaboration Notes [ close ] David Denning, U. Manchester; Bill Nierman, TIGR |
Babesia bovis
| Whole Genome Shotgun | Finishing |
End: unspec.
Papio hamadryas
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Haemonchus contortus
| Whole Genome Shotgun (8X) |
End: unspec.
Rhinolophus ferrumequinum
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Artibeus jamaicensis
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Myotis lucifugus
| Whole Genome Shotgun (2X) | Whole Genome Shotgun (5X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Russell Ray - Capecchi Lab, Howard Hughes Medical Institute |
Myotis lucifugus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Carollia perspicillata
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Tribolium castaneum
| Whole Genome Shotgun (7X) | BAC-based Shotgun (or other large clone) (0.5X) |
End: unspec.
Project URL
NHGRI (USA) (URL)
Tuber melanosporum
| Whole Genome Shotgun (12X) |
End: unspec.
Blastomyces dermatitidis ER-3
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Blastomyces dermatitidis SLH#14081
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Shistosoma mansoni
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] TIGR |
Ophiostoma clavigerum
| Whole Genome Shotgun (10X) |
End: 1-2008
Bos taurus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Bos taurus
| Whole Genome Shotgun (6X) | BAC-based Shotgun (or other large clone) (2X) |
End: 2007
Project URL
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bos taurus
| BAC-based Shotgun (or other large clone) |
End: 2006
Project URL
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bos taurus
| Whole Genome Shotgun |
End: unspec.
Project URL
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bos taurus
| BAC-based Shotgun (or other large clone) |
End: unspec.
| Collaboration Notes [ close ] Sequencing shared equally with Baylor University |
Capsaspora owczarzaki ATCC 30864
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Felis catus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Felis catus
| Whole Genome Shotgun (2X) |
Start: 1-2005
End: 8-2005
| Collaboration Notes [ close ] Collaboration with the Laboratory of Genomic Diversity (NCI) and Broad Institute for analysis and assisted assembly |
Felis catus
| Whole Genome Shotgun (4X) |
End: 5-2008
Felis catus
| Whole Genome Shotgun (2X) |
Start: unspec.
End: unspec.
Project URL
Ictalurus punctatus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Chaetomium globosum CBS 148.51
| Whole Genome Shotgun (7X) |
Start: 11-2004
End: 11-2004
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Wendy Untereiner, Brandon University |
Gallus gallus
| Whole Genome Shotgun (6X) | Finishing |
End: unspec.
Project URL
NHGRI (USA) (URL)
Gallus gallus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Pan troglodytes
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 1-2003
End: unspec.
| Collaboration Notes [ close ] RIKEN, CNHGCS, KRIBB, NYMU |
Pan troglodytes
SNP discovery
| Whole Genome Shotgun (4X) |
Start: 5-2003
End: 8-2004
Project URL
| Collaboration Notes [ close ] WUGSC |
Pan troglodytes
| Whole Genome Shotgun (6X) |
Start: unspec.
End: unspec.
Project URL
| Collaboration Notes [ close ] Whitehead Institute/MIT Center for Genome Research |
Pan troglodytes
| BAC-based Shotgun (or other large clone) | Finishing |
End: unspec.
Project URL
| Collaboration Notes [ close ] David Page, Whitehead Institute (Y Chromosome) |
Pan troglodytes
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 12-2004
End: 7-2005
| Collaboration Notes [ close ] KRIBB |
Pan troglodytes
| 175,755 BAC-end sequences (1X) |
Start: 1-2003
End: 1-2003
| Collaboration Notes [ close ] KRIBB |
Pan troglodytes
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Pan troglodytes
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 1-2001
End: unspec.
| Collaboration Notes [ close ] CHGC, GBF, IMB, KRIBB, MPI, NIG, YMGC |
Pan troglodytes
| BAC-based Shotgun (or other large clone) | Finishing |
End: 6-2008
Project URL
Monosiga brevicollis
| Whole Genome Shotgun (8X) |
End: unspec.
Batrachochytrium dendrobatidis JEL423
| Whole Genome Shotgun (10X) |
Start: unspec.
End: 10-2006
Project URL
| Collaboration Notes [ close ] Tim James |
Oxytricha trifallax (macronucleus)
Comparative-grade finished regions
| Whole Chromosome Shotgun (4X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Laura Landweber and Tom Doak, Princeton University |
Tetrahymena thermophila
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
NIGMS (USA) (URL)
Latimeria chalumnae
| Whole Genome Shotgun |
End: unspec.
Project URL
Cynocephalus variegatus
| Whole Genome Shotgun (2X) |
End: 2-2008
Sorex araneus
| Whole Genome Shotgun (2X) |
Start: 9-2005
End: 6-2006
Project URL
Gymnogyps californianus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Coprinus cinereus okyama 7#130
| Whole Genome Shotgun (10X) |
Start: 6-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] Patricia Pukkila, UNC; Fungal Genome Initiative Steering Committee |
Zea mays
| Whole Chromosome Shotgun (6X) |
End: 10-2007
NSF (USA) (URL)
USDOE (USA) (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
| Collaboration Notes [ close ] Also involves Stanford University and University of Georgia |
Zea mays B73
| BAC-based Shotgun (or other large clone) (10X) |
End: unspec.
| Collaboration Notes [ close ] Rutgers University, University of Arizona, MIPS, MIT |
Zea mays B73
| 400, 000 BAC-end sequencing |
End: unspec.
| Collaboration Notes [ close ] Rutgers University, University of Arizona, MIPS |
Zea mays B73
assembled onto maize and rice genomes
| 1M reads |
End: unspec.
Project URL
| Collaboration Notes [ close ] Donald Danforth, Plant Science Center; Purdue University; Orion Genomics |
Zea mays B73
| BAC-based Shotgun (or other large clone) (12X) |
Start: 12-2004
End: unspec.
Project URL
NSF
| Collaboration Notes [ close ] PGIR, Broad, MIPS, University of Arizona |
Zea mays B73
Finished region
| BAC-based Shotgun (or other large clone) (6X) |
End: 10-2008
Project URL
NSF (USA) (URL)
USDOE (USA) (URL)
Joint project with NSF/USDA/DOE. Shotgun sequencing of Mo17 by the Joint Genome Institute.
| Collaboration Notes [ close ] Project also involves Cold Spring Harbor Laboratory, University of Arizona Genomics Institute, Iowa State University |
Zea mays B73
| Methyl-filtration (0.5X) |
Start: 1-2004
End: 1-2001
Project URL
USDOE (USA) (URL)
NSF maize pilot project
| Collaboration Notes [ close ] TIGR, University of Georgia, Orion Genomics |
Zea mays B73
| 475,000 BAC-ends (8X) |
Start: 1-2001
End: 5-2004
Project URL
| Collaboration Notes [ close ] University of Arizona, MIPS |
Zea mays B73
| Methyl-filtration (0.5X) |
Start: 1-2004
End: 1-2001
Ustilago maydis 521
| Whole Genome Shotgun (10X) |
Start: unspec.
End: 7-2003
Project URL
| Collaboration Notes [ close ] Joerg Kaemper, MPI Marburg; Fungal Genome Initiative Steering Committee |
Cryptococcus neoformans B-3501A
| Whole Genome Shotgun |
Start: unspec.
End: unspec.
Project URL
| Collaboration Notes [ close ] Stanford Genome Center |
Cryptococcus neoformans H99
| BAC-end sequencing |
Start: 1-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] University of British Columbia; Duke University |
Cryptococcus neoformans JEC21
| BAC-end sequencing |
Start: 1-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] University of British Columbia; Duke University |
Cryptococcus neoformans JEC21
| Whole Genome Shotgun | Finishing |
Start: unspec.
End: unspec.
Project URL
| Collaboration Notes [ close ] Stanford Genome Center |
Cryptococcus neoformans WM276
| Whole Genome Shotgun |
Start: 2006
End: 1-2006
Project URL
| Collaboration Notes [ close ] University of British Columbia |
Cryptococcus neoformans sero A H99
| Whole Genome Shotgun (10X) |
Start: 5-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] Joseph Heitman, Duke; Fungal Genome Initiative Steering Committee |
Cryptococcus neoformans sero B R265
| Whole Genome Shotgun (4X) |
Start: 11-2004
End: 11-2004
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Fred Dietrich, Duke |
Histoplasma capsulatum G186AR
| Whole Genome Shotgun (4X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Histoplasma capsulatum H143
| Whole Genome Shotgun (4X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Histoplasma capsulatum H88
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Histoplasma capsulatum NAm1
| Whole Genome Shotgun (4X) |
Start: unspec.
End: 8-2005
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; John Taylor, Berkeley |
Thalassiosira pseudonana
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
Phaeodactylum tricornutum
| Whole Genome Shotgun (8X) |
End: unspec.
Blastomyces dermatitidis
| Whole Genome Shotgun (4X) |
End: 5-2007
Project URL
| Collaboration Notes [ close ] This draft assembly was generated for use in comparative studies with H. capsulatum G217B and G186AR, also sequenced at the GSC. |
Canis familiaris
SNP discovery,
Other,
Improved Genome
| Whole Genome Shotgun (6.5X) | BAC-based Shotgun (or other large clone) |
End: unspec.
Project URL
American Kennel Club
| Collaboration Notes [ close ] Canine Genome Mapping Community |
Canis familiaris
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Canis familiaris
| BAC-end sequences (10X) |
Start: 1-2003
End: 1-2003
| Collaboration Notes [ close ] WICGR |
Canis familiaris
| 200,000 BAC-end sequences (1X) |
End: 3-2007
Tursiops truncatus
| Whole Genome Shotgun (2.5X) |
End: unspec.
Project URL
Hyaloperonospora parasitica Emoy2 strain
Other,
Automated sequence improvement
| Whole Genome Shotgun (8X) |
End: 8-2007
Sminthopsis crassicaudata
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Callicebus moloch
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Tachyglossus aculeatus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Loxodonta africana
| Whole Genome Shotgun (2X) | Whole Genome Shotgun (5X) |
End: unspec.
Project URL
Loxodonta africana
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Dromaius novaehollandiae
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Entamoeba dispar
| Whole Genome Shotgun (2X) |
Start: unspec.
End: unspec.
Project URL
Wellcome Trust (UK) (URL)
Entamoeba histolytica
| Whole Genome Shotgun (12X) |
Start: unspec.
End: unspec.
Project URL
Wellcome Trust (UK) (URL)
Entamoeba invadens
| Whole Genome Shotgun (3X) |
Start: unspec.
End: unspec.
Project URL
Wellcome Trust (UK) (URL)
Mustela furo
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Daphnia pulex
| Whole Genome Shotgun (8X) |
End: unspec.
| Collaboration Notes [ close ] Daphnia Genome Consortium |
Xenopus tropicalis
| Whole Genome Shotgun (7X) |
End: unspec.
Project URL
Xenopus tropicalis
| BAC-based Shotgun (or other large clone) (6X) |
End: unspec.
| Collaboration Notes [ close ] Joint Genome Institute |
Xenopus tropicalis
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Drosophila ananassae
| Whole Genome Shotgun (8X) |
Start: 6-2004
End: 6-2004
Drosophila ananassae
| 16,047 BAC-end Sequences (1X) |
Start: 1-2001
End: 1-2001
| Collaboration Notes [ close ] KIT |
Drosophila auraria
| 13,013 BAC-end sequences (1X) |
Start: 1-2003
End: 1-2001
| Collaboration Notes [ close ] KIT |
Drosophila erecta
| Whole Genome Shotgun (8X) |
Start: 9-2004
End: 3-2005
| Collaboration Notes [ close ] Collaboration with Drosophila Analysis Consortium for analysis |
Drosophila grimshawi
| Whole Genome Shotgun (8X) |
End: 6-2005
| Collaboration Notes [ close ] Collaboration with the Drosophila Analysis consortium for analysis |
Drosophila melanogaster
| Finishing |
Start: 1-2001
End: unspec.
NIGMS (USA) (URL)
NCI (USA) (URL)
HHMI (USA) (URL)
| Collaboration Notes [ close ] Berkeley Drosophila Genome Project; Celera Genomics |
Drosophila melanogaster
| 11,706 BAC-end Sequences (1X) |
Start: 1-2001
End: 1-2001
| Collaboration Notes [ close ] KIT |
Drosophila mojavensis
| Whole Genome Shotgun (8X) |
Start: 8-2004
End: 11-2004
| Collaboration Notes [ close ] Collaboration with the Drosophila Analysis consortium for analysis |
Drosophila persimilis
| Whole Genome Shotgun (3X) |
Start: 7-2005
End: 7-2005
Project URL
Drosophila pseudoobscura
| Whole Genome Shotgun (8X) |
Start: 10-2003
End: unspec.
Project URL
Drosophila sechellia
| Whole Genome Shotgun (3X) |
Start: 8-2005
End: 8-2005
Project URL
Drosophila sechellia
| 15,251 BAC-end Sequences (1X) |
Start: 1-2001
End: unspec.
| Collaboration Notes [ close ] KIT |
Drosophila simulans
| Whole Genome Shotgun (4X) |
Start: 12-2003
End: 4-2005
Project URL
| Collaboration Notes [ close ] Charles (Chuck) Langley and David Begun, University of California-Davis |
Drosophila simulans
| 16,110 BAC-end sequences (1X) |
Start: 1-2001
End: 1-2001
| Collaboration Notes [ close ] KIT |
Drosophila virilis
| Whole Genome Shotgun (8X) |
Start: 5-2004
End: 9-2004
| Collaboration Notes [ close ] Collaboration with the Drosophila Analysis consortium for analysis |
Drosophila willistoni
| Whole Genome Shotgun (7.5X) |
End: unspec.
Drosophila willistoni
| Whole Genome Shotgun (1X) |
Start: 9-2004
End: 6-2005
Drosophila yakuba
Other,
Automated sequence improvement
| Whole Genome Shotgun (8X) |
Start: 12-2003
End: 2-2006
Project URL
| Collaboration Notes [ close ] Charles (Chuck) Langley and David Begun, University of California-Davis |
Otolemur garnetti
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Otolemur garnetti
| Whole Genome Shotgun (2X) |
Start: 12-2005
End: 1-2006
Project URL
| Collaboration Notes [ close ] Sheree Watson, University of Southern Mississippi |
Nomascus leucogenys leucogenys
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Nomascuc leucogenys
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
Stagonospora nodorum SN15
| Whole Genome Shotgun (10X) |
Start: 1-2003
End: 5-2005
Project URL
GRDC (Australia)
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Australian Centre for Necrotrophic Fungal Pathogens; Richard Oliver, (Murdoch U.); Peter Solomon, (Murdoch U.) |
Gorilla gorilla gorilla
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Gorilla gorilla gorilla
| Whole Genome Shotgun (4X) |
End: unspec.
Cavia porcellus
| Whole Genome Shotgun (7X) |
End: unspec.
Project URL
Cavia porcellus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Atelerix albiventris
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Erinaceus europeaus
| Whole Genome Shotgun (2X) |
Start: 10-2005
End: 10-2005
Project URL
Histoplasma capsulatum G186AR
| Whole Genome Shotgun (6X) |
End: 6-2007
Project URL
| Collaboration Notes [ close ] Anita Sil, UCSF; Bill Goldman, Washington University School of Medicine |
Histoplasma capsulatum G217B
Whole-genome Map,
Draft Assembly,
Other,
Automated sequence improvement
| Whole Genome Shotgun (13X) |
End: 6-2007
Project URL
| Collaboration Notes [ close ] Anita Sil, UCSF; Bill Goldman, Washington University School of Medicine |
Apis mellifera
| Whole Genome Shotgun (6X) | BAC-based Shotgun (or other large clone) (2X) |
Start: 6-2005
End: 7-2006
Project URL
NHGRI (USA) (URL)
Apis mellifera
Finished region
| Other |
End: unspec.
Project URL
Nippostrongylus braziliensis
| Whole Genome Shotgun (8X) |
End: unspec.
Equus caballus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Equus caballus
| Whole Genome Shotgun (7X) |
Start: 2-2006
End: 8-2006
Project URL
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 1-2001
End: 1-2003
Project URL
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 4-2003
End: unspec.
Project URL
Homo sapiens
| Whole Genome Shotgun (1X) |
Start: 5-2004
End: unspec.
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 4-2003
End: unspec.
Project URL
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 4-2003
End: unspec.
Project URL
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 4-2003
End: unspec.
Project URL
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
End: unspec.
Project URL
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 4-2003
End: 4-2003
Project URL
| Collaboration Notes [ close ] BI/MIT, GBF, IMB, Keio, MPI, SI |
Homo sapiens
| Whole Chromosome Shotgun (1X) |
End: unspec.
Project URL
Homo sapiens
| Whole Genome Shotgun (1X) |
Start: unspec.
End: 8-2004
Project URL
Homo sapiens
Unspecified
| Other |
End: 12-2007
Project URL
Homo sapiens
| Whole Genome Shotgun (1X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sanger Institute |
Homo sapiens
| BAC-based Shotgun (or other large clone) | Finishing |
End: unspec.
Project URL
| Collaboration Notes [ close ] Evan Eichler, Case Western Reserve University; Maynard Olson, University of Washington |
Homo sapiens
| BAC-based Shotgun (or other large clone) (8X) | Finishing (1X) |
Start: 1-2003
End: unspec.
| Collaboration Notes [ close ] Whitehead Institute for Biomedical Research |
Homo sapiens
| BAC-based Shotgun (or other large clone) (8X) | Finishing |
Start: 4-2003
End: unspec.
| Collaboration Notes [ close ] Sanger Institute |
Homo sapiens
| BAC-based Shotgun (or other large clone) (8X) | Finishing |
Start: 4-2003
End: unspec.
| Collaboration Notes [ close ] Baylor College of Medicine |
Homo sapiens
| BAC-based Shotgun (or other large clone) (8X) | Finishing |
Start: 4-2003
End: unspec.
Homo sapiens
| Fosmid- and BAC-based Shotgun | Finishing |
End: 12-2005
Project URL
Homo sapiens
Other,
Structural variation
| Whole Genome Shotgun (0.5X) |
Start: 6-2005
End: 9-2005
| Collaboration Notes [ close ] Collaboration with Evan Eichler's group for analysis of structural variants and Jim Mullikin's group for SNP discovery |
Homo sapiens
Other,
Structural variatino
| Whole Genome Shotgun (0.5X) |
Start: 9-2005
End: 2-2006
| Collaboration Notes [ close ] Collaboration with Evan Eichler's group for analysis of structural variants and Jim Mullikin's group for SNP discovery |
Homo sapiens
Other,
Structural variation
| Whole Genome Shotgun (0.5X) |
Start: 1-2006
End: 3-2006
| Collaboration Notes [ close ] Collaboration with Evan Eichler's group for analysis of structural variants and Jim Mullikin's group for SNP discovery |
Homo sapiens
Other,
Structural Variation
| Whole Genome Shotgun (0.5X) |
End: 5-2006
Bacteriodetes and Firmicutes
Comparative-grade finished regions
| Whole Genome Shotgun (4X) | 454 sequence (15X) | automated and some manual sequence improvement |
End: unspec.
Project URL
| Collaboration Notes [ close ] This was an original pilot at the GSC, and it has been expanded to a larger pilot microbiome project (not necessarily all gut microbes) to be carried out in conjuction with the Baylor Genome Sequencing Center and the Broad Institute Sequencing Center. |
Schistosoma mansoni
| Whole Genome Shotgun |
End: unspec.
Project URL
Wellcome Trust (UK) (URL)
| Collaboration Notes [ close ] SI (UK) |
Trichomonas vaginalis
| Whole Genome Shotgun (6X) |
Start: 10-2002
End: 4-2006
Project URL
| Collaboration Notes [ close ] UCLA |
Procavia capensis
| Whole Genome Shotgun (2X) |
End: unspec.
Procavia capensis
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Dipodomys ordii
| Whole Genome Shotgun (2X) |
End: unspec.
Project URL
Rhodnius prolixus
| Whole Genome Shotgun (6X) | automated, primer-directed sequence improvement |
End: unspec.
Project URL
| Collaboration Notes [ close ] Erwin Huebner, University of Manitoba Ellen Dotson, Centers for Disease Control Carl Lowenberger, Simon Frazer University, Canada Fernando Monteiro, Instituto Oswaldo Cruz, Brazi; Pedro L Oliveira, Universidade Federal do Rio de Janeiro, Brazil Antonio Bernardo Carvalho, Universidade Federal do Rio de Janeiro, Brazil Francisco Panzera, Universidad de la Republica, Uruguary |
Kluyveromyces lactis
| Whole Genome Shotgun (10X) |
End: unspec.
| Collaboration Notes [ close ] Genolevure Consortium collaboration |
Kluyveromyces thermotolerans
| Whole Genome Shotgun (3X) |
End: unspec.
| Collaboration Notes [ close ] Genolevure Consortium collaboration |
Lacazia loboi EDM7
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Petromyzon marinus
Draft Assembly,
Other,
ESTs and 454 cDNA
| Whole Genome Shotgun (6X) |
End: unspec.
Project URL
Branchiostoma floridae
| Whole Genome Shotgun (8X) |
End: unspec.
Branchiostoma floridae
| 42,645 BAC-end sequences (1X) |
Start: 1-2003
End: 1-2001
| Collaboration Notes [ close ] JGI |
Ascaris lumbicoides
| Whole Genome Shotgun (8X) |
End: 1-2007
Oikopleura dioica
| Whole Genome Shotgun (10X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sars International Centre for Marine Molecular Biology |
Colletotrichum graminicola M1.001
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
NSF (USA) (URL)
| Collaboration Notes [ close ] Lisa Vaillancourt, (University of Kentucky); Martin B. Dickman, (Texas A&M University); Michael Thon, (Texas A&M University); Chris Schardl, (University of Kentucky); Jeffrey Osborn, (University of Kentucky). |
Medicago truncatula
| BAC-based Shotgun (or other large clone) (10X) | Finishing |
End: unspec.
| Collaboration Notes [ close ] LIPM, UMR CNRS-INRA 2594/441, Toulouse, France |
Medicago truncatula
| Whole Genome Shotgun | Finishing |
End: 2-2008
BBSRC, European Commission
Medicago truncatula
| BAC-based Shotgun (or other large clone) |
End: unspec.
Project URL
EU, BBSRC, INRA
| Collaboration Notes [ close ] Oklahoma U., TIGR, Sanger, Genoscope |
Medicago truncatula
| BAC-based Shotgun (or other large clone) (1X) |
Start: 1-2001
End: 1-2003
Project URL
NSF, Noble Foundation, EU
| Collaboration Notes [ close ] Oklahoma, EU, TIGR, Minnesota, UC Davis, Noble Foundation |
Eulemur macaco macaco
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Microcebus murinus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Lemur catta
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
neofelis nebulosa
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Leptosphaeria maculans
| Whole Genome Shotgun (10X) |
End: unspec.
Project URL
Anolis carolinensis
| Whole Genome Shotgun (6X) |
Start: 7-2006
End: 7-2006
Project URL
Lodderomyces elongisporus NRRLYB-4239
| Whole Genome Shotgun (8X) |
Start: 10-2005
End: 6-2006
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Joe Heitman, Duke |
Macaca fuscata
| 167,159 BAC-end Sequences (1X) |
Start: unspec.
End: unspec.
| Collaboration Notes [ close ] NIPS |
Macaca mulatta
| Whole Genome Shotgun (2X) | BAC-based Shotgun (or other large clone) (2X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] TIGR, WUGSC |
Macaca mulatta
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Macaca mulatta
| Whole Genome Shotgun (2X) |
End: unspec.
Macaca mulatta
| Whole Genome Shotgun (2X) |
End: unspec.
| Collaboration Notes [ close ] TIGR, BCM-HGSC |
Macaca mulatta
| Whole Genome Shotgun (2X) |
End: unspec.
Macaca mulatta
| BAC-based Shotgun (or other large clone) |
End: unspec.
| Collaboration Notes [ close ] Sequencing shared equally with Baylor University |
Callithrix jacchus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Callithrix jacchus
| BAC-end sequences (1X) |
End: 3-2007
Callithrix jacchus
| Whole Genome Shotgun (7X) |
End: unspec.
Project URL
Callithrix jacchus
| BAC-based Shotgun (or other large clone) |
End: unspec.
| Collaboration Notes [ close ] Sequencing shared equally with Baylor University |
Callithrix jacchus
| Whole Genome Shotgun (6X) |
Start: 5-2006
End: 4-2007
Project URL
| Collaboration Notes [ close ] Sequencing shared equally with Baylor University |
Pteropus vampyrus
| Whole Genome Shotgun (2X) |
End: unspec.
Project URL
Pteropus vampyrus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Microsporum canis CBS113480
| Whole Genome Shotgun (8X) |
End: 1-2007
Project URL
| Collaboration Notes [ close ] Theodore White; (U. Washington and SBRI); Richard Summerbell, (CBS); Susan Abdel-Rahman, (U. Missouri); Sarah Jane Gurr, (U. Oxford); Nilce Martinez-Rossi, (FMRP); Yvonne Gräser, (Humboldt U). |
Microsporum gypseum CBS118893
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Theodore White; (U. Washington and SBRI); Richard Summerbell, (CBS); Susan Abdel-Rahman, (U. Missouri); Sarah Jane Gurr, (U. Oxford); Nilce Martinez-Rossi, (FMRP); Yvonne Gräser, (Humboldt U). |
Botrytis cinerea B05.10
| Whole Genome Shotgun (4X) |
Start: 7-2005
End: 7-2005
Project URL
Syngenta
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Mark Rose, Syngenta |
Sclerotinia sclerotiorum 1980
| Whole Genome Shotgun (8X) |
Start: unspec.
End: 10-2005
Project URL
NSF (USA) (URL)
| Collaboration Notes [ close ] Martin Dickman, (U. Nebraska); Jeffrey Rollins, (U. Florida); Linda Kohn, (U. Toronto). |
Ateles geoffroyi
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Saimiri boliviensis boliviensis
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Colobus guereza
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Aotus nancymaae
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Cercopithecus aethiops
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Mortierella verticillata NRRL 6337
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Aedes aegyptii
| Whole Genome Shotgun (4X) |
Start: 10-2005
End: 7-2006
Project URL
| Collaboration Notes [ close ] David Severson, University of Notre Dame; Dennis Knudson, Colorado State University; Brendan Loftus, TIGR |
Aedes aegyptii
| BAC end sequencing |
End: unspec.
Project URL
Aedes aegyptii
| Whole Genome Shotgun |
End: unspec.
| Collaboration Notes [ close ] BI/MIT |
Anopheles gambiae
| Whole Genome Shotgun |
Start: 1-2001
End: 3-2002
Project URL
French Ministry of Research, World Health Organization
| Collaboration Notes [ close ] Celera, EMBL, Notre Dame University, Pasteur Institut, IMB. |
Anopheles gambiae M
Draft Assembly
| Whole Genome Shotgun (8X) | BAC end sequencing (0.5X) |
End: unspec.
Project URL
Culex pipiens quinquefasciatus JHB
| Whole Genome Shotgun (4X) |
Start: unspec.
End: 3-2007
Project URL
| Collaboration Notes [ close ] Peter Atkinson, U. California; Frank Collins, U. Notre Dame; Janet Hemingway, U. Liverpool; Malcolm Gardner, TIGR, VectorBase |
Mus musculus
| Finishing |
Start: 1-2004
End: unspec.
Project URL
| Collaboration Notes [ close ] WUGSC, WICGR |
Mus musculus
| Whole Genome Shotgun | BAC-based Shotgun (or other large clone) | Finishing |
Start: 12-2005
End: unspec.
Project URL
| Collaboration Notes [ close ] WICGR, SI |
Mus musculus
| Whole Genome Shotgun | Finishing |
Start: unspec.
End: unspec.
Project URL
| Collaboration Notes [ close ] SI, WUGSC |
Mus musculus
| BAC-based Shotgun (or other large clone) | Finishing |
End: unspec.
| Collaboration Notes [ close ] Univ Hannover |
Mus musculus
| BAC-based Shotgun (or other large clone) (4X) | Finishing (10X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Torrey Pines Institute for Molecular Studies, San Diego |
Mus musculus
| BAC-based Shotgun (or other large clone) | Whole Genome Shotgun | Finishing |
End: 12-2007
Project URL
| Collaboration Notes [ close ] David Page, Whitehead Institute |
Mus musculus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
Start: 8-2003
End: unspec.
Mus musculus
| Finishing |
Start: 12-2005
End: unspec.
Project URL
| Collaboration Notes [ close ] WUGSC, WIBR |
Mus musculus
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 1-2003
End: 1-2003
Mus musculus
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 1-2003
End: 1-2003
Mus musculus
| Finishing |
End: 11-2007
Project URL
Immune Tolerance Network
Plasmodium yoelii
| Whole Genome Shotgun |
Start: unspec.
End: unspec.
Project URL
USDoD
| Collaboration Notes [ close ] Naval Medical Research Center |
Plasmodium yoelii
| Whole Genome Shotgun (6X) |
End: unspec.
Project URL
USDoD
| Collaboration Notes [ close ] Naval Medical Research Center |
Mus musculus molossinus
| 337,471 BAC-end Sequences (1X) |
Start: unspec.
End: unspec.
| Collaboration Notes [ close ] RIKEN BRC |
Muntiacus reevesi
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Muntiacus muntjak vaginalis
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Arabidopsis thaliana
| MTP |
Start: 1-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] Stanford University, Cold Spring Harbor Laboratories, MIPS |
Caenorhabditis brenneri
| Whole Genome Shotgun (9X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Karin Kiontke, New York University Erich Schwarz, Caltech Paul Sternberg, Caltech |
Caenorhabditis briggsae
| Whole Genome Shotgun |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sanger Institute |
Caenorhabditis briggsae
Unspecified
| BAC-based Shotgun (or other large clone) |
End: unspec.
Project URL
Caenorhabditis elegans
| Whole Genome Shotgun | Finishing |
Start: 1-2001
End: unspec.
| Collaboration Notes [ close ] Sanger Institute |
Caenorhabditis elegans
| Whole Genome Shotgun | Finishing |
Start: 1-2001
End: unspec.
| Collaboration Notes [ close ] WUGSC |
Caenorhabditis japonia
| Whole Genome Shotgun (9X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Karin Kiontke, New York University Erich Schwarz, Caltech Paul Sternberg, Caltech |
Caenorhabditis remanei
| Whole Genome Shotgun (9X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Min-Ho Lee, University of Albany Paul Sternberg, Caltech |
Heterorhabditis bacteriophora
| Whole Genome Shotgun (6X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Todd Ciche, Michigan State Univerisity Parwinder Grewal, Ohio State University |
Pristionchus pacificus var California
Draft Assembly
| Whole Genome Shotgun (9X) |
End: 2007
Project URL
Genome Canada (Canada) (URL)
| Collaboration Notes [ close ] The BAC end sequences were provided by Genome Canada. |
Brugia malayi
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
Neurospora crassa
| Unknown |
End: unspec.
Project URL
| Collaboration Notes [ close ] University of Kentucky |
Neurospora crassa
Finished genome
| Whole Genome Shotgun (10X) | Finishing |
End: unspec.
Project URL
NSF (USA) (URL)
| Collaboration Notes [ close ] Oregon Graduate Institute of Science and Technology; University of Kentucky; University of Kansas Medical Center |
Nosema locustae
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] MBL, Connecticut Agricultural Experiment Station |
Nuclearia simplex CCAP 1552/2
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Monodelphis domestica
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Monodelphis domestica
SNP discovery
| Whole Genome Shotgun (7X) |
Start: 10-2004
End: 10-2006
Project URL
| Collaboration Notes [ close ] WUGSC |
Monodelphis domestica
| BAC-based Shotgun (or other large clone) |
End: unspec.
| Collaboration Notes [ close ] Sequencing shared equally with Baylor University |
Didelphis virginiana
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Pongo pygmaeus pygmaeus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Pongo pygmaeus pygmaeus
Finished region,
SNP discovery
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] WUGSC |
Pongo pygmaeus pygmaeus
| Whole Genome Shotgun (3X) |
End: 2-2007
Project URL
| Collaboration Notes [ close ] BCM-HGSC |
Fusarium oxysporum FGSC 4286
| Whole Genome Shotgun (7X) |
Start: 3-2006
End: 2-2007
Project URL
| Collaboration Notes [ close ] Dr. Corby Kistler at USDA, ARS Cereal Disease Lab of University of Minnesota; Dr. Jin-Rong Xu ant Purdue University; Dr. Frances Trail at Michigan State University; Dr. Seogchan Kang at Penn State University; Dr. Won-Bo Shim at Texas A&M University; Dr. Charles Woloshuk at Purdue University |
Manis pentadactyla
| Whole Genome Shotgun (2X) |
End: 1-2008
Project URL
Paracoccidioides brasiliensis Pb01
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Paracoccidioides brasiliensis Pb03
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Paracoccidioides brasiliensis Pb18
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Maria Sueli Felipe, (University of Brasília); Bill Goldman, (Washington University); Gustavo H. Goldman, (Universidade de São Paulo); Bruce Klein, (University of Wisconsin Madison); Celia Maria Soares, (Federal University of Goias); Juan G. McEwen, (University of Antioquia Medellín); Leonel Mendoza, (Michigan State University); Gustavo Niño-Vega, (Venezuelan Institute for Scientific Research); Rosana Puccia, (Federal University of São Paulo); Gioconda San-Blas, (Venezuelan Institute for Scientific Research); Anita Sil, (University of California San Francisco); John Taylor, (UC Berkeley). |
Paramecium tetraurelia
| Whole Genome Shotgun (10X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] CNRS collaboration |
Ichthyophthirius multifiliis
| Whole Genome Shotgun (10X) |
End: 11-2009
Perkinsus marinus
| Whole Genome Shotgun (1X) |
End: unspec.
| Collaboration Notes [ close ] The Center for Marine Biotechnology |
Emiliania huxleyi
| Whole Genome Shotgun (8X) |
End: unspec.
Ostreococcus sp.
| Whole Genome Shotgun (8X) |
End: unspec.
Sus scrofa
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Sus scrofa
Finished region,
SNP discovery
| BAC-based Shotgun (or other large clone) (3X) | Whole genome shotgun to 6X of SSC 4, 7 & 14 (3X) |
End: 12-2008
Project URL
Wellcome Trust (UK) (URL)
National Pork Board (USA); Iowa Pork Producers Association (USA); Iowa State University (USA); North Carolina Pork Council (USA); North Carolina Agriculturaal Research Service (USA); Korean National Livestock Research Institute; The Institute for Pig Genetics (Netherlands); National Institute of Agrobiological Science (Japan); European Union Cutting Edge Genomics for Sustainable Animal Breeding
Ochotona princeps
| Whole Genome Shotgun (2X) |
Start: 8-2006
End: 4-2007
Project URL
Schmidtea mediterranea
Other,
ESTs and 454 cDNA
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Alejandro Sanchez Alvarado, University of Utah, Peter Reddien, Massachusetts Institute of Technology and Phil Newmark, University of Illinois at Urbana-Champaign |
Plasmodium falciparum 87_239
SNP discovery
| Whole Genome Shotgun (4X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sarah Volkman, (Harvard School of Public Health); Dan Hartl, (Harvard); Dyann Wirth, (Harvard School of Public Health). |
Plasmodium falciparum Dd2
| Whole Genome Shotgun (10X) |
Start: 2005
End: 8-2006
Project URL
| Collaboration Notes [ close ] Dan Hartl, Harvard; Dyann Wirth, Harvard School of Public Health |
Plasmodium falciparum HB3
| Whole Genome Shotgun (10X) |
Start: 2005
End: 2-2006
Project URL
| Collaboration Notes [ close ] Dan Hartl, Harvard; Dyann Wirth, Harvard School of Public Health |
Plasmodium falciparum IGH-CR14
SNP discovery
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sarah Volkman, (Harvard School of Public Health); Dan Hartl, (Harvard); Dyann Wirth, (Harvard School of Public Health). |
Plasmodium falciparum JDP8
SNP discovery
| Whole Genome Shotgun (4X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sarah Volkman, (Harvard School of Public Health); Dan Hartl, (Harvard); Dyann Wirth, (Harvard School of Public Health). |
Plasmodium falciparum RAJ116
SNP discovery
| Whole Genome Shotgun (4X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sarah Volkman, (Harvard School of Public Health); Dan Hartl, (Harvard); Dyann Wirth, (Harvard School of Public Health). |
Plasmodium vivax
| Finishing (10X) |
Start: 12-2001
End: 3-2007
Project URL
Burroughs Wellcome Fund, USDoD
| Collaboration Notes [ close ] Emory University School of Medicine, Centers for Disease Control |
Plasmodium reichenowi
SNP discovery
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sarah Volkman, (Harvard School of Public Health); Dan Hartl, (Harvard); Dyann Wirth, (Harvard School of Public Health). |
Ornithorhynchus anatinus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Ornithorhynchus anatinus
| BAC-end sequences (1X) |
End: 3-2007
| Collaboration Notes [ close ] Jennifer A. Marshall Graves (Australian National University), Dr.Marilyn B. Renfree (The University of Melbourne) |
Ornithorhynchus anatinus
| Whole Genome Shotgun (6X) |
Start: 12-2006
End: 4-2007
Project URL
Pneumocystis murina
| Other |
End: unspec.
Project URL
| Collaboration Notes [ close ] Melanie Cushion, University of Cincinnati; Fungal Genome Initiative Steering Committee |
Podospora anserina
| Whole Genome Shotgun (10X) |
Start: 1-2001
End: 4-2005
Project URL
Hydra magnipapillata
| (0.5X) |
End: unspec.
Populus spp.
Unspecified
| Other |
Start: 2006
End: 1-2006
Project URL
| Collaboration Notes [ close ] University of British Columbia |
Populus spp.
| Whole Genome Shotgun (6X) |
End: unspec.
Phytophthora infestans T30-4
SNP discovery
| Whole Genome Shotgun (8X) |
Start: 11-2003
End: unspec.
| Collaboration Notes [ close ] William Fry (Cornell University); Howard Judelson (University of California-Riverside); Sophien Kamoun (Ohio State University); Jean Ristaino (North Carolina State University); Francine Govers (Wageningen University); Paul Birch (Scottish Crop Research Institute); Steve Whisson (Scottish Crop Research Institute). |
Proterospongia sp. ATCC 50818
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Takifugu rubripes
| Whole Genome Shotgun | Finishing (0.5X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Sydney Brenner, HGMP Cambridge, IMCB Singapore collaboration |
Takifugu rubripes
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Takifugu rubripes
| BAC-based Shotgun (or other large clone) (3X) |
End: unspec.
| Collaboration Notes [ close ] Joint Genome Institute; Institute of Molecular and Cellular Biology, Singapore; MRC, England |
Sphoeroides nephelus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Tetraodon nigroviridis
| Whole Genome Shotgun |
Start: 1-2001
End: 10-2004
Project URL
Tetraodon nigroviridis
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Oryctolagus cuniculus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Oryctolagus cuniculus
| Whole Genome Shotgun (2X) | Whole Genome Shotgun (5X) |
End: unspec.
Project URL
Rattus norvegicus
| Whole Genome Shotgun | BAC-based Shotgun (or other large clone) |
Start: 12-2004
End: unspec.
Project URL
Rattus norvegicus
| Whole Genome Shotgun (5X) | BAC-based Shotgun (or other large clone) (2X) |
Start: 1-2003
End: unspec.
Project URL
NHLBI (USA) (URL)
| Collaboration Notes [ close ] Celera, Genome Therapeutics, Univ. Utah, BCCA Genome Sciences Centre, TIGR |
Rattus norvegicus
Partially Finished
| BAC-based Shotgun (or other large clone) (4X) | Finishing (10X) |
Start: 2-2004
End: 12-2004
| Collaboration Notes [ close ] MDC Berlin |
Rattus norvegicus
| BAC-based Shotgun (or other large clone) | Finishing |
End: unspec.
Project URL
| Collaboration Notes [ close ] Univ Goettingen |
Rattus norvegicus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
Start: 8-2003
End: unspec.
Rattus norvegicus
SNP discovery
| Other |
End: unspec.
Project URL
Rattus norvegicus
| BAC-based Shotgun (or other large clone) |
End: unspec.
| Collaboration Notes [ close ] Sequencing shared equally with Baylor University |
Rhizopus oryzae RA99-880
| Whole Genome Shotgun (14X) |
Start: 11-2004
End: 8-2005
Project URL
| Collaboration Notes [ close ] Ashraf Ibrahim, UCLA; Fungal Genome Initiative Steering Committee |
Oryza sativa japonica
| Whole Genome Shotgun | MTP |
Start: 1-2003
End: unspec.
Project URL
NSF (USA) (URL)
USDOE (USA) (URL)
| Collaboration Notes [ close ] Arizona Genomics Institute; Cold Spring Harbor; Washington University; TIGR; PGIR; International Rice Genome Sequencing Project |
Oryza sativa japonica
| BAC-based Shotgun (or other large clone) (10X) |
Start: 12-2004
End: unspec.
Project URL
NSF (USA) (URL)
USDOE (USA) (URL)
NSF, USDA, USDOE, Rutgers University, other countries
| Collaboration Notes [ close ] International Rice Genome Sequencing Project (IRGSP) |
Oryza sativa japonica
| BAC-based Shotgun (or other large clone) |
End: unspec.
Project URL
NSF (USA) (URL)
USDOE (USA) (URL)
Oryza sativa japonica
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 1-2001
End: 9-2004
Project URL
Magnaporthe grisea 70-15
| Unknown |
End: unspec.
| Collaboration Notes [ close ] University of Kentucky |
Magnaporthe grisea 70-15
Finished genome
| Whole Genome Shotgun (7X) | Finishing |
End: unspec.
Project URL
NSF (USA) (URL)
| Collaboration Notes [ close ] International Rice Blast Genome Consortium |
Trichophyton equinum CBS127.97
| Whole Genome Shotgun (5X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Theodore White; (U. Washington and SBRI); Richard Summerbell, (CBS); Susan Abdel-Rahman, (U. Missouri); Sarah Jane Gurr, (U. Oxford); Nilce Martinez-Rossi, (FMRP); Yvonne Gräser, (Humboldt U). |
Alternaria brassicicola
Whole-genome Map,
Draft Assembly,
Other,
ESTs and 454 cDNA
| Whole Genome Shotgun (6.5X) | BAC fingerprint map; BAC end sequence (0.5X) | ESTs and 454 cDNA |
End: 8-2007
Project URL
NSF (USA) (URL)
Salmo salar
| BAC-based Shotgun (or other large clone) |
End: unspec.
Project URL
Genome Canada (Canada) (URL)
| Collaboration Notes [ close ] Simon Fraser University; University of Victoria |
Salmo salar
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Phlebotomus papatasi
Draft Assembly
| Whole Genome Shotgun (2X) | BAC end sequencing (0.5X) | EST and 454 cDNA |
End: unspec.
Project URL
Nematostella vectensis
| Whole Genome Shotgun (8X) |
End: unspec.
Ciona intestinalis
| Whole Genome Shotgun (8X) |
Start: 12-2002
End: unspec.
Project URL
Ciona savignyi
| Whole Genome Shotgun (13X) |
Start: 11-2003
End: 11-2003
Project URL
| Collaboration Notes [ close ] Arend Sidow, Stanford University |
Strongylocentrotus purpuratus
| Whole Genome Shotgun (6X) | BAC-based Shotgun (or other large clone) (2X) |
End: unspec.
Project URL
Strongylocentrotus purpuratus
SNP discovery,
Comparative-grade finished regions
| Upgrade |
End: unspec.
Project URL
| Collaboration Notes [ close ] Comparative sequence generation from 4 other species for the SNP and functional sequence annotation. |
Fusarium verticillioides 7600
| Whole Genome Shotgun (4X) | Whole Genome Shotgun (4X) |
Start: 1-2007
End: 1-2007
Syngenta: 4X WGS
| Collaboration Notes [ close ] Dr. Corby Kistler at USDA, ARS Cereal Disease Lab of University of Minnesota; Dr. Jin-Rong Xu ant Purdue University; Dr. Frances Trail at Michigan State University; Dr. Seogchan Kang at Penn State University; Dr. Won-Bo Shim at Texas A&M University; Dr. Charles Woloshuk at Purdue University; Mark Rose, Syngenta |
Squalus acanthias
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Ginglymostoma cirratum
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Ovis aries
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Sorex araneus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Tupaia belangeri
| Whole Genome Shotgun (2X) |
Start: 9-2005
End: 7-2006
Project URL
| Collaboration Notes [ close ] German Primate Center |
Tupaia belangeri
| Whole Genome Shotgun (4X) |
End: 3-2008
Project URL
Tupaia belangeri
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Bombyx mori
| BAC-based Shotgun (or other large clone) |
Start: 1-2001
End: unspec.
Leucoraja erinacea
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Dictyostelium discoideum
| Whole Genome Shotgun (6.5X) |
Start: 12-2003
End: 5-2005
Project URL
| Collaboration Notes [ close ] Univ Cologne, Sanger Institute, Baylor College of Medicine |
Dictyostelium fasciculatum
Regional assembly,
Finished region
| Whole Genome Shotgun (8X) |
End: 3-2008
| Collaboration Notes [ close ] Collaboration with the labs of P. Schaap (Dundee) and AA Noegel (Cologne) |
Physarum polycephalum
Other,
ESTs and 454 cDNA
| Whole Genome Shotgun (6X) |
End: unspec.
Project URL
Polysphondilium pallidum
| Whole Genome Shotgun | Finishing |
End: 12-2008
DFG (Germany) (URL)
| Collaboration Notes [ close ] Collaboration with the labs of P. Schaap (Dundee) and AA Noegel (Cologne) |
Choloepus hoffmanni
| Whole Genome Shotgun (2X) |
End: 12-2007
Project URL
Biomphalaria glabrata
Draft Assembly,
Other,
ESTs and 454 cDNA
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
Wellcome Trust (UK) (URL)
The Wellcome Trust Sanger Institute is providing at least 40,000 ESTs for this project.
Sorghum vulgare
| BAC-based Shotgun (or other large clone) (12X) |
Start: 12-2004
End: unspec.
Project URL
NSF Comparative genomics between maize, sorghum, and rice
| Collaboration Notes [ close ] Jeff Bennetzen, University of Georgia |
Phytophthora sojae
| Whole Genome Shotgun (8X) |
End: unspec.
NSF (USA) (URL)
USDOE (USA) (URL)
Phytophthora sojae
| Whole Genome Shotgun (5X) | BAC-end sequencing |
End: unspec.
NSF (USA) (URL)
USDOE (USA) (URL)
| Collaboration Notes [ close ] Virginia Tech |
Phakopsora meibomiae
| Whole Genome Shotgun (8X) |
End: unspec.
USDOE (USA) (URL)
Phakopsora pachyrhizi
| Whole Genome Shotgun (8X) |
End: unspec.
USDOE (USA) (URL)
Sphaeroforma arctica JP610
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Spizellomyces punctatus DAOM BR117
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Spermophilus tridecemlineatus
| Whole Genome Shotgun (2X) |
Start: 10-2005
End: 6-2006
Project URL
| Collaboration Notes [ close ] John Hallenbeck |
Spermophilus tridecemlineatus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Stephanoeca sp.
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicole King, (UC Berkeley); B. Franz Lang, (Université de Montréal); Andrew Roger, (Dalhousie University); Gertraud Burger, (Université de Montréal); Michael W. Gray, (Dalhousie University); Peter Holland, (University of Oxford); Barry Leadbeater, (University of Birmingham); Mary Berbee, (University of British Columbia); Hervé Philippe, (Université de Montréal); Emma Steenkamp, (University of Pretoria). |
Gasterosteus aculeatus
SNP discovery
| Whole Genome Shotgun (9X) |
Start: unspec.
End: 2-2006
Project URL
| Collaboration Notes [ close ] David Kingsley, Stanford |
Gasterosteus aculeatus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Phytophthora ramorum
| Whole Genome Shotgun (8X) |
End: unspec.
NSF (USA) (URL)
USDOE (USA) (URL)
Echinococcus multiocularis
| Whole Genome Shotgun (8X) |
End: 2007
Project URL
Tarsius syrichta
| Whole Genome Shotgun (2X) |
End: 4-2008
Project URL
Echinops telfairi
| Whole Genome Shotgun (2X) |
Start: 5-2005
End: 5-2005
Project URL
Echinops telfairi
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Strongyloides ratti
| Whole Genome Shotgun (8X) |
End: unspec.
Ixodes scapularis Wikel
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Vish Nene, TIGR; Catherine Hill, Purdue; Stephen Wikel, UCHC |
Trichophyton rubrum CBS118892
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Theodore White; (U. Washington and SBRI); Richard Summerbell, (CBS); Susan Abdel-Rahman, (U. Missouri); Sarah Jane Gurr, (U. Oxford); Nilce Martinez-Rossi, (FMRP); Yvonne Gräser, (Humboldt U). |
Lycopersicon esculentum
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Project URL
Souces of funding include Korea , China, UK, India, Spain, Netherlands, France, Japan, and Italy.
| Collaboration Notes [ close ] NSF portion is sequencing 20 BACs. It is part of larger international project to sequence the whole genome using a BAC-by-BAC strategy. |
Solanum lycopersicum
| Finishing |
End: 10-2008
BBSRC
Gopherus agassizii
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Toxoplasma gondii
| Whole Genome Shotgun |
End: unspec.
Trichinella spiralis
Whole-genome Map,
Draft Assembly,
Other,
ESTs
| Whole Genome Shotgun (8X) | Automated sequence improvement | BAC fingerprint map, BAC end sequences, and ESTs (0.5X) |
End: 6-2007
Project URL
Trichoderma reesei
| Whole Genome Shotgun (8X) |
End: unspec.
Trichophyton tonsurans CBS112818
| Whole Genome Shotgun (5X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Theodore White; (U. Washington and SBRI); Richard Summerbell, (CBS); Susan Abdel-Rahman, (U. Missouri); Sarah Jane Gurr, (U. Oxford); Nilce Martinez-Rossi, (FMRP); Yvonne Gräser, (Humboldt U). |
Trypanosoma brucei
| BAC-based Shotgun (or other large clone) | Finishing |
Start: 1-2001
End: unspec.
Project URL
| Collaboration Notes [ close ] Collaborative effort with the Pathogen Sequencing Unit at the Sanger Institute where sequencing and annotation of Chr 1, 9, 10 and 11 is taking place. |
Trypanosoma cruzi
Finished region
| Whole Genome Shotgun |
Start: 4-2005
End: unspec.
Project URL
Sphenodon punctatus
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Meleagris gallopavo
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Nothobranchius furzeri
Whole Genome Sample Sequences
| Whole Genome Shotgun (0.5X) |
End: 4-2008
TKM (Thüringer Kultusministerium) http://www.thueringen.de/de/tkm; WGL (Wissenschaftsgemeinschaft Gottfried Wilhelm Leibniz) http://www.wgl.de
| Collaboration Notes [ close ] Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) |
Uncinocarpus reesii 1704
| Whole Genome Shotgun (5X) |
Start: unspec.
End: 11-2005
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; John Taylor, Berkeley |
Coccidioides immitis H538.4
| Whole Genome Shotgun (3X) |
Start: 1-2006
End: 7-2006
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides immitis RMSCC 2394
| Whole Genome Shotgun (8X) |
Start: 1-2006
End: 10-2006
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides immitis RMSCC 3703
| Whole Genome Shotgun (3X) |
Start: 1-2006
End: 5-2007
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides immitis RS
| Whole Genome Shotgun (10X) |
Start: unspec.
End: 3-2004
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Theo Kirkland, UCSD |
Coccidioides immitis RS
| Whole Genome Shotgun (4X) | Finishing |
End: unspec.
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii CPA 0020
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii CPA 0066
| Whole Genome Shotgun (3X) |
End: unspec.
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii RMSCC 1037
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii RMSCC 1038
| Whole Genome Shotgun (3X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii RMSCC 1040
| Whole Genome Shotgun (3X) |
End: 1-2007
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii RMSCC 2133
| Whole Genome Shotgun (8X) |
Start: 1-2006
End: 6-2007
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii RMSCC 3488
| Whole Genome Shotgun (8X) |
Start: 1-2006
End: 5-2006
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii RMSCC 3700
| Whole Genome Shotgun (3X) |
Start: 1-2006
End: 5-2007
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Coccidioides posadasii Silveria
| Whole Genome Shotgun (5X) |
Start: 1-2006
End: 6-2007
Project URL
| Collaboration Notes [ close ] Garry Cole, (Med. Col. Of Ohio); John Galgiani, (U of. Arizona, Tucson); Malcolm Gardner, (TIGR, Rockville); Theo Kirkland, (UCSD School of Medicine); Marc Orbach, (U. of. Arizona); John Taylor, (UC Berkeley). |
Verticillium albo-atrum VaMs.102
SNP discovery
| Whole Genome Shotgun (4X) |
End: unspec.
Project URL
Verticillium dahliae VdLs.17
SNP discovery
| Whole Genome Shotgun (7X) |
End: unspec.
Project URL
Verticillium longisporum VdBob.70
Comparative Analysis
| Whole Genome Shotgun (0.5X) |
End: unspec.
Project URL
Macropus eugenii
| Whole Genome Shotgun (2X) |
End: unspec.
Project URL
Australian Genome Research Facility Ltd. (AGRF) (URL) The Victorian State Government (URL) Brockhoff Foundation
| Collaboration Notes [ close ] Australian Genome Research Facility Ltd. (AGRF) |
Macropus eugenii
| 20,000 Fosmid-end sequences (1X) |
End: 3-2007
| Collaboration Notes [ close ] Jennifer A. Marshall Graves (Australian National University), Dr.Marilyn B. Renfree (The University of Melbourne) |
Macropus eugenii
| BAC-end sequences (1X) |
End: 3-2007
| Collaboration Notes [ close ] Jennifer A. Marshall Graves (Australian National University), Dr.Marilyn B. Renfree (The University of Melbourne) |
Macropus eugenii
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Nasonia giraulti
SNP discovery
| Whole Genome Shotgun |
End: unspec.
Project URL
Nasonia longicornis
SNP discovery
| Whole Genome Shotgun |
End: unspec.
Project URL
Nasonia vitripennis
SNP discovery
| Whole Genome Shotgun |
End: unspec.
Project URL
Pseudorca crassidens
| 200,000 BAC-end sequences (1X) |
End: 3-2007
| Collaboration Notes [ close ] KRIBB |
Triticum aestivum
Finished region
| BAC-based Shotgun (or other large clone) (12X) | Finishing |
End: unspec.
Fusarium graminearum PH-1
| Whole Genome Shotgun (10X) |
Start: unspec.
End: unspec.
Project URL
NSF (USA) (URL)
| Collaboration Notes [ close ] Dr. Corby Kistler at USDA, ARS Cereal Disease Lab of University of Minnesota; Dr. Jin-Rong Xu ant Purdue University; Dr. Frances Trail at Michigan State University; Dr. Seogchan Kang at Penn State University; Dr. Won-Bo Shim at Texas A&M University; Dr. Charles Woloshuk at Purdue University |
Pyrenophora tritici-repentis Pt-1C-BFP
| Whole Genome Shotgun (6X) |
Start: unspec.
End: 3-2007
Project URL
NSF (USA) (URL)
| Collaboration Notes [ close ] Dr. Lynda Ciuffetti (Oregon State University); Dr. Iovanna Pandelova (Oregon State University). |
Puccinia graminis f.sp. triciti CRL75-36-700-3
| Whole Genome Shotgun (8X) |
Start: unspec.
End: 1-2007
Project URL
| Collaboration Notes [ close ] Les Szabo, U. Minnesota; Ralph Dean, NC State; Jacqueline Schein, British Columbia Cancer Agency Genome Sciences Ctr |
Trichuris muris
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
Phanerochaete chrysosporium
| Whole Genome Shotgun (8X) |
Start: 1-2003
End: unspec.
Project URL
Vitis vinifera
| BAC-based Shotgun (or other large clone) (12X) |
End: 12-2007
Project URL
| Collaboration Notes [ close ] INRA collaboration; International Grape Genome Program |
Yarrowia lipolytica
| Whole Genome Shotgun (10X) | Finishing (0.5X) |
Start: 5-2003
End: 5-2005
Botrytis cinerea
| Whole Genome Shotgun (12X) |
Start: 12-2004
End: 12-2004
Candida albicans WO-1
| Whole Genome Shotgun (8X) |
Start: 10-2005
End: 10-2006
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; T. Srikantha, University of Iowa |
Candida guilliermondii ATCC6260
| Whole Genome Shotgun (7X) |
Start: 11-2004
End: 11-2004
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Joe Heitman, Duke |
Candida lusitaniae ATCC 42720
| Whole Genome Shotgun (7X) |
Start: 11-2004
End: 11-2004
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Joe Heitman, Duke |
Candida tropicalis MYA-3404
| Whole Genome Shotgun (8X) |
Start: 11-2004
End: 11-2004
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; T. Srikantha, University of Iowa |
Debaryomyces hansenii
| Whole Genome Shotgun (10X) | Finishing (0.5X) |
Start: 1-2001
End: 5-2004
Kluyveromyces waltii NCYC 2644
| Whole Genome Shotgun (7X) |
Start: unspec.
End: 3-2003
Project URL
Pichia sorbitophila
| Whole Genome Shotgun (12X) |
Start: 3-2005
End: 3-2005
| Collaboration Notes [ close ] Genolevure Consortium Collaboration |
Saccharomyces bayanus
| Whole Genome Shotgun |
Start: 1-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] Mark Johnston, Washington University School of Medicine |
Saccharomyces bayanus MCYC 623-C857001
| Whole Genome Shotgun (7X) |
Start: unspec.
End: 3-2003
Project URL
Saccharomyces castellii
| Whole Genome Shotgun |
Start: 1-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] Mark Johnston, Washington University School of Medicine |
Saccharomyces cerevisiae EC1118
| Whole Genome Shotgun (6X) |
Start: 1-2006
End: 8-2006
Saccharomyces cerevisiae RM11-1a
| Whole Genome Shotgun (10X) |
Start: 11-2004
End: 12-2004
Project URL
| Collaboration Notes [ close ] Fungal Genome Initiative Steering Committee; Jackie Whittle, FHCRC |
Saccharomyces kluyveri
Other,
Automated sequence improvement
| Whole Genome Shotgun (10X) |
End: 6-2007
Project URL
| Collaboration Notes [ close ] Mark Johnston, Washington University School of Medicine |
Saccharomyces kudriavzevii
| Whole Genome Shotgun |
Start: 1-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] Mark Johnston, Washington University School of Medicine |
Saccharomyces mikatae
| Whole Genome Shotgun |
Start: 1-2003
End: unspec.
Project URL
| Collaboration Notes [ close ] Mark Johnston, Washington University School of Medicine |
Saccharomyces mikatae IFO1812
| Whole Genome Shotgun (7X) |
Start: unspec.
End: 3-2003
Project URL
Saccharomyces paradoxus NRRL Y-17217
| Whole Genome Shotgun (7X) |
Start: unspec.
End: 3-2003
Project URL
Schizosaccharomyces octosporus yFS286
| Whole Genome Shotgun (8X) |
End: unspec.
Project URL
| Collaboration Notes [ close ] Nicholas Rhind, (University of Massachusetts) |
Schizzosaccharomyces japonicus yFS275
| Whole Genome Shotgun (9X) |
Start: 8-2005
End: 10-2006
Project URL
| Collaboration Notes [ close ] Nicholas Rhind, (University of Massachusetts) |
Zygosaccharomyces rouxii
| Whole Genome Shotgun (12X) |
Start: 10-2004
End: 10-2004
| Collaboration Notes [ close ] Genolevure Consortium Collaboration |
Taeniopygia guttata
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Taeniopygia guttata
| Whole Genome Shotgun (6X) |
End: 10-2007
Danio rerio
Comparative-grade finished regions
| BAC-based Shotgun (or other large clone) (8X) |
End: unspec.
Danio rerio
| Whole Genome Shotgun | BAC-based Shotgun (or other large clone) |
End: unspec.
Project URL