Acanthocoepis
Acanthocoepis sp.

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Acorn worm
Saccoglossus kowalevskii

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 2-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Algae, Brown
Ectocarpus silicosus

Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 10-2004
End: unspec.
Project URL
Genoscope (France) (URL) CNRG (Consortium national de recherche en génomique)
Algae, Green
Bathycoccus sp. (BAN7)

Plant Genome Finished genome
Whole Genome Shotgun (12X) Finishing (0.5X)
Start: 10-2007
End: 12-2008
Genoscope (France) (URL) Consortium National de Recherche en Genomique (CNRG)
Algae, Green
Chlamydomonas reinhardtii

Plant Genome Draft Assembly,
Other,
Automated annotation and community curation
Whole Genome Shotgun (8X)
Start: 12-2003
End: 5-2007
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Algae, Red
Chondrus crispus

Plant Genome Draft Assembly
Whole Genome Shotgun (12X)
Start: 2-2007
End: 12-2009
Genoscope (France) (URL) CNRG (National Consortium of Genomic Research)
Alligator
Alligator mississippiensis

Reptile Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Allomyces
Allomyces macrogynus ATCC 38327

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Alpaca
Vicugna pacos

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 8-2007
End: 12-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Amastigomonas
Amastigomonas sp. ATCC 50062

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Amoeba
Acanthamoeba castellanii

Protist Genome Draft Assembly
Whole Genome Shotgun (20X)
Start: 5-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Amoebidium
Amoebidium parasiticum JAP-7-2

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Amphipod crustacean
Jassa slatteryi

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (5X)
Start: 6-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Aphid, Pea
Buchnera aphidicola str. APS - Acyrthosiphon pisum

Invertebrate Animal Genome Finished genome
Whole Genome Shotgun (7X) Finishing
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan) (URL) Show Notes
Aphid, Pea
Buchnera aphidicola str. APS - Acyrthosiphon pisum

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 5-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 1-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus

Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 10-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Arthroderma benhamiae
Arthroderma benhamiae

Fungus Genome Draft Assembly,
Finished region
Whole Genome Shotgun (8X)
Start: 1-2007
End: 12-2008
Project URL
GGSAC (Germany) (URL) BMBF (Germany) (URL)
TKM (Thüringer Kultusministerium) http://www.thueringen.de/de/tkm; WGL (Wissenschaftsgemeinschaft Gottfried Wilhelm Leibniz) http://www.wgl.de; HKI (Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute) http://www.hki-jena.de
Show Notes
Aspergillus
Aspergillus nidulans FGSC-4A

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2-2003
End: 2-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Aspergillus
Aspergillus terreus NIH 2624

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 12-2005
End: 11-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Show Notes
Baboon
Papio hamadryas

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Baboon
Papio hamadryas

Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 6-2007
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Barber pole worm
Haemonchus contortus

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
SI (UK) (URL) Wellcome Trust (UK) (URL)
Bat, Horseshoe
Rhinolophus ferrumequinum

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Bat, Little Brown
Myotis lucifugus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) Whole Genome Shotgun (5X)
Start: 8-2005
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Bat, Short-tailed Fruit
Carollia perspicillata

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Beetle, Red Flour
Tribolium castaneum

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X) BAC-based Shotgun (or other large clone) (0.5X)
Completed
Start: 12-2005
End: 4-2008
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Black truffle
Tuber melanosporum

Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Start: 4-2006
End: unspec.
Genoscope (France) (URL) CNRG
Blastomycosis
Blastomyces dermatitidis ER-3

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Show Notes
Blastomycosis
Blastomyces dermatitidis SLH#14081

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Show Notes
Blood fluke
Shistosoma mansoni

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Show Notes
Blue stain fungus
Ophiostoma clavigerum

Fungus Genome Finished genome
Whole Genome Shotgun (10X)
Start: 1-2007
End: 1-2008
BCGSC (Canada) (URL) Canadian Forest Service Canadian Ministry of Forestry and Range
Bovine
Bos taurus

Mammal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 11-2006
End: 2007
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus

Mammal Selected regions Holstein breed SNP discovery
BAC-based Shotgun (or other large clone)
Start: 3-2006
End: 2006
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus

Mammal Genomes of 8 breeds SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus

Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Show Notes
Bovine
Bos taurus

Mammal Y chromosome BAC-end sequence,
Regional assembly,
Finished region
BAC-based Shotgun (or other large clone) (6X) Finishing
Start: 6-2006
End: unspec.
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Bumble bee
Bombus terrestris

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (15X)
Start: 2008
End: unspec.
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
California mouse
Peromyscus californicus

Mammal Genome Whole-genome Map
Whole Genome Shotgun (2X)
Start: 2008
End: unspec.
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Capsaspora
Capsaspora owczarzaki ATCC 30864

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Cat
Felis catus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Cat
Felis catus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 8-2005
ABC (USA) (URL) NHGRI (USA) (URL)
Show Notes
Cat
Felis catus

Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 1-2008
End: 5-2008
WUGSC (USA) (URL) NHGRI (USA) (URL)
Cat
Felis catus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Catfish, Channel
Ictalurus punctatus

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Centipede
Strigamia maritima

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 1-2008
End: 1-2008
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Chaetomium
Chaetomium globosum CBS 148.51

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Chicken
Gallus gallus

Bird Genome Finished region
Whole Genome Shotgun (6X) Finishing
Start: 8-2006
End: unspec.
Project URL
WUGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Chicken
Gallus gallus

Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes

Mammal Chr 22: 8.5Mb Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2003
End: unspec.
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Show Notes
Chimpanzee
Pan troglodytes

Mammal Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Completed
Start: 5-2003
End: 8-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Chimpanzee
Pan troglodytes

Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Show Notes
Chimpanzee
Pan troglodytes

Mammal Chromosome Y male-specific region Finished genome
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 12-2004
End: 7-2005
RIKEN (Japan) (URL) Show Notes
Chimpanzee
Pan troglodytes

Mammal 40Mb on chromosome X Finished region
BAC-based Shotgun (or other large clone) Finishing
Start: 7-2005
End: 6-2008
Project URL
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Chytridiomycosis
Batrachochytrium dendrobatidis JEL423

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 10-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Ciliate
Oxytricha trifallax (macronucleus)

Protist Whole chromosomes Draft Assembly,
Comparative-grade finished regions
Whole Chromosome Shotgun (4X)
Start: 11-2004
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Show Notes
Ciliate
Tetrahymena thermophila

Protist Macronuclear Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 2-2005
End: unspec.
Project URL
TIGR (USA) (URL) NSF (USA) (URL)
NIGMS (USA) (URL)
Coelacanth
Latimeria chalumnae

Fish Genome Draft Assembly
Whole Genome Shotgun
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Colugo
Cynocephalus variegatus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 6-2007
End: 2-2008
WUGSC (USA) (URL) NHGRI (USA) (URL)
Common Shrew, European
Sorex araneus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 9-2005
End: 6-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Condor, California
Gymnogyps californianus

Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Coprinus
Coprinus cinereus okyama 7#130

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 6-2003
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Corn
Zea mays

Plant Chromosome 10 Draft Assembly
Whole Chromosome Shotgun (6X)
Start: 11-2005
End: 10-2007
JCVI (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
Show Notes
Corn
Zea mays B73

Plant Genome BAC-end sequence
400, 000 BAC-end sequencing
Start: 8-2004
End: unspec.
Multiple Groups () (URL) NSF (USA) (URL)
Show Notes
Corn
Zea mays B73

Plant Genome Draft Assembly,
Finished region
BAC-based Shotgun (or other large clone) (6X)
Start: 11-2005
End: 10-2008
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Joint project with NSF/USDA/DOE. Shotgun sequencing of Mo17 by the Joint Genome Institute.
Show Notes
Corn
Zea mays B73

Plant Genome BAC-end sequence
475,000 BAC-ends (8X)
Completed
Start: 1-2001
End: 5-2004
Project URL
PGSP (International) (URL) NSF Show Notes
Corn Smut Disease
Ustilago maydis 521

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 7-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Show Notes
Cotton bollworm
Helicoverpa armigera

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (15X)
Start: 1-2008
End: 2008
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Cryptococcus
Cryptococcus neoformans H99

Fungus Genome BAC-end sequence
BAC-end sequencing
Completed
Start: 1-2003
End: unspec.
Project URL
BCGSC (Canada) (URL) NSERC (Canada) (URL)
Show Notes
Cryptococcus
Cryptococcus neoformans JEC21

Fungus Genome BAC-end sequence
BAC-end sequencing
Completed
Start: 1-2003
End: unspec.