Frog, South African clawed
Xenopus tropicalis

Amphibian Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 12-2004
End: unspec.
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Frog, South African clawed
Xenopus tropicalis

Amphibian Developmental genes Other
BAC-based Shotgun (or other large clone) (6X)
Start: 12-2004
End: unspec.
ISB (USA) (URL) NICHD
Frog, South African clawed
Xenopus tropicalis

Amphibian Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Chicken
Gallus gallus

Bird Genome Finished region
Whole Genome Shotgun (6X) Finishing
Start: 8-2006
End: unspec.
Project URL
WUGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Chicken
Gallus gallus

Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Condor, California
Gymnogyps californianus

Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Emu
Dromaius novaehollandiae

Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Zebrafinch
Taeniopygia guttata

Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Zebrafinch
Taeniopygia guttata

Bird Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 5-2006
End: 10-2007
WUGSC (USA) (URL) NHGRI (USA) (URL)
Turkey
Meleagris gallopavo

Bird Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Pufferfish, Japanese
Takifugu rubripes

Fish Genome Finished
Whole Genome Shotgun Finishing (0.5X)
Start: 6-2005
End: unspec.
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Pufferfish, Japanese
Takifugu rubripes

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Pufferfish, Japanese
Takifugu rubripes

Fish Selected genes Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (3X)
Start: 8-2004
End: unspec.
ISB (USA) (URL) Singapore Economic Development
Pufferfish, Spotted Green
Tetraodon nigroviridis

Fish Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2001
End: 10-2004
Project URL
Genoscope (France) (URL)
Pufferfish, Spotted Green
Tetraodon nigroviridis

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Zebrafish
Danio rerio

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Zebrafish
Danio rerio

Fish Genome Draft Assembly
Whole Genome Shotgun BAC-based Shotgun (or other large clone)
Start: 12-2005
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Salmon
Salmo salar

Fish 4 Mb Unspecified
BAC-based Shotgun (or other large clone)
Start: 2005
End: unspec.
Project URL
BCGSC (Canada) (URL) NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
Salmon
Salmo salar

Fish Seleced regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Lamprey, Sea
Petromyzon marinus

Fish Genome BAC-end sequence,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6X)
Start: 3-2004
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Stickleback, Three-spined
Gasterosteus aculeatus

Fish Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (9X)
Completed
Start: unspec.
End: 2-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Stickleback, Three-spined
Gasterosteus aculeatus

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Catfish, Channel
Ictalurus punctatus

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Shark, Dogfish (spiny)
Squalus acanthias

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Shark, Nurse
Ginglymostoma cirratum

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Pufferfish, Southern
Sphoeroides nephelus

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Skate, Little
Leucoraja erinacea

Fish Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Turquoise killifish
Nothobranchius furzeri

Fish Genome Other,
Whole Genome Sample Sequences
Whole Genome Shotgun (0.5X)
Start: 5-2006
End: 4-2008
GGSAC (Germany) (URL) BMBF (Germany) (URL)
TKM (Thüringer Kultusministerium) http://www.thueringen.de/de/tkm; WGL (Wissenschaftsgemeinschaft Gottfried Wilhelm Leibniz) http://www.wgl.de
Yeast
Saccharomyces mikatae IFO1812

Fish Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Coelacanth
Latimeria chalumnae

Fish Genome Draft Assembly
Whole Genome Shotgun
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Rice blast
Magnaporthe grisea 70-15

Fungus Telomeres (2.4Mb) High quality sequence
Unknown
Start: 9-2003
End: unspec.
Multiple Groups () (URL) NSF (USA) (URL)
Neurospora
Neurospora crassa

Fungus Telomeres (2.4Mb) High quality sequence
Unknown
Start: 9-2003
End: unspec.
Project URL
Multiple Groups () (URL) NSF (USA) (URL)
Nosema
Nosema locustae

Fungus Genome Unspecified
Whole Genome Shotgun (3X)
Start: 9-2005
End: unspec.
Project URL
Multiple Groups () (URL) NSF (USA) (URL)
Rice blast
Magnaporthe grisea 70-15

Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (7X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
Soybean rust (New World)
Phakopsora meibomiae

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA) (URL) USDA (USA) (URL)
USDOE (USA) (URL)
Histoplasma
Histoplasma capsulatum G217B

Fungus Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (13X)
Start: 9-2003
End: 6-2007
Project URL
WUGSC (USA) (URL) NIAID (USA) (URL)
Aspergillus
Aspergillus nidulans FGSC-4A

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2-2003
End: 2-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Coprinus
Coprinus cinereus okyama 7#130

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 6-2003
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Cryptococcus
Cryptococcus neoformans sero A H99

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 5-2003
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Rhizopus
Rhizopus oryzae RA99-880

Fungus Genome Draft Assembly
Whole Genome Shotgun (14X)
Completed
Start: 11-2004
End: 8-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yeast
Saccharomyces bayanus

Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Yeast
Saccharomyces mikatae

Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Corn Smut Disease
Ustilago maydis 521

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 7-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yarrowia
Yarrowia lipolytica

Fungus Genome Finished genome
Whole Genome Shotgun (10X) Finishing (0.5X)
Completed
Start: 5-2003
End: 5-2005
Genoscope (France) (URL) CNRG (Consortium national de recherche en génomique)
Kluyveromyces
Kluyveromyces lactis

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 5-2003
End: unspec.
Genoscope (France) (URL)
Kluyveromyces
Kluyveromyces thermotolerans

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 5-2003
End: unspec.
Genoscope (France) (URL)
Podospora
Podospora anserina

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 1-2001
End: 4-2005
Project URL
Genoscope (France) (URL)
Soybean rust (Old World)
Phakopsora pachyrhizi

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA) (URL) USDA (USA) (URL)
USDOE (USA) (URL)
Sudden Oak Death
Phytophthora ramorum

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Soybean Root rot
Phytophthora sojae

Fungus Genome Unspecified
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Soybean Root rot
Phytophthora sojae

Fungus Genome
Whole Genome Shotgun (5X) BAC-end sequencing
Start: 8-2004
End: unspec.
DOE - JGI (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Wheat stem rust
Puccinia graminis f.sp. triciti CRL75-36-700-3

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 1-2007
Project URL
BI/MIT (USA) (URL) NSF (USA) (URL)
Neurospora
Neurospora crassa

Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (10X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
White rot
Phanerochaete chrysosporium

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2003
End: unspec.
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Yeast
Saccharomyces kudriavzevii

Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Yeast
Saccharomyces castellii

Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2003
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Yeast
Saccharomyces kluyveri

Fungus Genome Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (10X)
Start: 12-2004
End: 6-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Histoplasma
Histoplasma capsulatum G186AR

Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 9-2003
End: 6-2007
Project URL
WUGSC (USA) (URL) NIAID (USA) (URL)
Cryptococcus
Cryptococcus neoformans JEC21

Fungus Genome BAC-end sequence
BAC-end sequencing
Completed
Start: 1-2003
End: unspec.
Project URL
BCGSC (Canada) (URL) NSERC (Canada) (URL)
Cryptococcus
Cryptococcus neoformans H99

Fungus Genome BAC-end sequence
BAC-end sequencing
Completed
Start: 1-2003
End: unspec.
Project URL
BCGSC (Canada) (URL) NSERC (Canada) (URL)
Cryptococcus
Cryptococcus neoformans WM276

Fungus Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 2006
End: 1-2006
Project URL
BCGSC (Canada) (URL) Genome Canada (Canada) (URL)
Yeast
Saccharomyces cerevisiae EC1118

Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 1-2006
End: 8-2006
Genoscope (France) (URL)
Trichoderma
Trichoderma reesei

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Yeast
Candida guilliermondii ATCC6260

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yeast
Candida lusitaniae ATCC 42720

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yeast
Candida tropicalis MYA-3404

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Lodderomyces
Lodderomyces elongisporus NRRLYB-4239

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 10-2005
End: 6-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Chaetomium
Chaetomium globosum CBS 148.51

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Uncinocarpus
Uncinocarpus reesii 1704

Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Completed
Start: unspec.
End: 11-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Cryptococcus
Cryptococcus neoformans sero B R265

Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 11-2004
End: 11-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yeast
Saccharomyces cerevisiae RM11-1a

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 11-2004
End: 12-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yeast
Candida albicans WO-1

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 10-2005
End: 10-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Cryptococcus
Cryptococcus neoformans JEC21

Fungus Genome Finished
Whole Genome Shotgun Finishing
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Mold, Gray
Botrytis cinerea B05.10

Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Syngenta
Glume blotch
Stagonospora nodorum SN15

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 1-2003
End: 5-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
GRDC (Australia)
Mold, White
Sclerotinia sclerotiorum 1980

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 10-2005
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
Yeast
Pichia sorbitophila

Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: 3-2005
End: 3-2005
Genoscope (France) (URL)
Yeast
Botrytis cinerea

Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: 12-2004
End: 12-2004
Genoscope (France) (URL)
Yeast
Zygosaccharomyces rouxii

Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: 10-2004
End: 10-2004
Genoscope (France) (URL)
Yeast
Debaryomyces hansenii

Fungus Genome Finished region
Whole Genome Shotgun (10X) Finishing (0.5X)
Completed
Start: 1-2001
End: 5-2004
Genoscope (France) (URL)
Yeast
Schizzosaccharomyces japonicus yFS275

Fungus Genome Draft Assembly
Whole Genome Shotgun (9X)
Completed
Start: 8-2005
End: 10-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yeast
Schizosaccharomyces octosporus yFS286

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 7-2005
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Black truffle
Tuber melanosporum

Fungus Genome Draft Assembly
Whole Genome Shotgun (12X)
Start: 4-2006
End: unspec.
Genoscope (France) (URL) CNRG
Leptosphaeria maculans
Leptosphaeria maculans

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 1-2006
End: unspec.
Project URL
Genoscope (France) (URL) CNRG (Consortium National de Recherche en Génomique)
Blue stain fungus
Ophiostoma clavigerum

Fungus Genome Finished genome
Whole Genome Shotgun (10X)
Start: 1-2007
End: 1-2008
BCGSC (Canada) (URL) Canadian Forest Service Canadian Ministry of Forestry and Range
Rot (necrotrophic fungus)
Alternaria brassicicola

Fungus Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6.5X) BAC fingerprint map; BAC end sequence (0.5X) ESTs and 454 cDNA
Start: 9-2004
End: 8-2007
Project URL
WUGSC (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
Dimorphic fungus (Ascomycete)
Blastomyces dermatitidis

Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 3-2004
End: 5-2007
Project URL
WUGSC (USA) (URL) NIAID (USA) (URL)
Arthroderma benhamiae
Arthroderma benhamiae

Fungus Genome Draft Assembly,
Finished region
Whole Genome Shotgun (8X)
Start: 1-2007
End: 12-2008
Project URL
GGSAC (Germany) (URL) BMBF (Germany) (URL)
TKM (Thüringer Kultusministerium) http://www.thueringen.de/de/tkm; WGL (Wissenschaftsgemeinschaft Gottfried Wilhelm Leibniz) http://www.wgl.de; HKI (Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute) http://www.hki-jena.de
Allomyces
Allomyces macrogynus ATCC 38327

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Aspergillus
Aspergillus terreus NIH 2624

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 12-2005
End: 11-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Chytridiomycosis
Batrachochytrium dendrobatidis JEL423

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 10-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Blastomycosis
Blastomyces dermatitidis SLH#14081

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Blastomycosis
Blastomyces dermatitidis ER-3

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides immitis RS

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: 3-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Valley Fever
Coccidioides immitis RS

Fungus Genome Finished genome
Whole Genome Shotgun (4X) Finishing
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides immitis H538.4

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 1-2006
End: 7-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides immitis RMSCC 2394

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2006
End: 10-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides immitis RMSCC 3703

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 1-2006
End: 5-2007
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii Silveria

Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Completed
Start: 1-2006
End: 6-2007
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 2133

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2006
End: 6-2007
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 3488

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 1-2006
End: 5-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 1037

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 1038

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 1040

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: 1-2007
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii RMSCC 3700

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 1-2006
End: 5-2007
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii CPA 0020

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Valley Fever
Coccidioides posadasii CPA 0066

Fungus Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
BI/MIT (USA) (URL) NIAID (USA) (URL)
Leaf Blight, Maize
Colletotrichum graminicola M1.001

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 1-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
Wheat Head Blight
Fusarium graminearum PH-1

Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
Panama Disease
Fusarium oxysporum FGSC 4286

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 3-2006
End: 2-2007
Project URL
BI/MIT (USA) (URL) NSF (USA) (URL)
Seed Rot, Maize
Fusarium verticillioides 7600

Fungus Genome Draft Assembly
Whole Genome Shotgun (4X) Whole Genome Shotgun (4X)
Completed
Start: 1-2007
End: 1-2007
BI/MIT (USA) (URL) NSF (USA) (URL)
Syngenta: 4X WGS
Darling's Disease
Histoplasma capsulatum NAm1

Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: unspec.
End: 8-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Darling's Disease
Histoplasma capsulatum H88

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Darling's Disease
Histoplasma capsulatum H143

Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Darling's Disease
Histoplasma capsulatum G186AR

Fungus Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Lacazia
Lacazia loboi EDM7

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Yeast
Kluyveromyces waltii NCYC 2644

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Microsporum
Microsporum canis CBS113480

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: 1-2007
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Microsporum
Microsporum gypseum CBS118893

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Paracoccidioidomycosis
Paracoccidioides brasiliensis Pb18

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Paracoccidioidomycosis
Paracoccidioides brasiliensis Pb03

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Paracoccidioidomycosis
Paracoccidioides brasiliensis Pb01

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Pneumonia, Mouse
Pneumocystis murina

Fungus Genome Draft Assembly
Other
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Wheat Tan Spot
Pyrenophora tritici-repentis Pt-1C-BFP

Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: 3-2007
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
Yeast
Saccharomyces bayanus MCYC 623-C857001

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Yeast
Saccharomyces paradoxus NRRL Y-17217

Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: unspec.
End: 3-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Sphaeroforma
Sphaeroforma arctica JP610

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Ringworm, Horse
Trichophyton equinum CBS127.97

Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Tinea pedia
Trichophyton rubrum CBS118892

Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Trichophyton
Trichophyton tonsurans CBS112818

Fungus Genome Draft Assembly
Whole Genome Shotgun (5X)
Start: 8-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Verticillium Wilts
Verticillium dahliae VdLs.17

Fungus Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (7X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
Verticillium Wilts
Verticillium albo-atrum VaMs.102

Fungus Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
Verticillium Wilts
Verticillium longisporum VdBob.70

Fungus Genome Other,
Comparative Analysis
Whole Genome Shotgun (0.5X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) USDA (USA) (URL)
Honey bee
Apis mellifera

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 6-2005
End: 7-2006
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Honey bee
Apis mellifera

Invertebrate Animal Genome Draft Assembly,
Finished region
Other
Start: 6-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Sea squirt
Ciona intestinalis

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 12-2002
End: unspec.
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Sea squirt
Ciona savignyi

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (13X)
Completed
Start: 11-2003
End: 11-2003
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila pseudoobscura

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 10-2003
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Acorn worm
Saccoglossus kowalevskii

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 2-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Sea urchin
Strongylocentrotus purpuratus

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Sea urchin
Strongylocentrotus purpuratus

Invertebrate Animal Genome Whole-genome Map,
SNP discovery,
Comparative-grade finished regions
Upgrade
Start: 2007
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Mosquito
Anopheles gambiae

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: 1-2001
End: 3-2002
Project URL
Genoscope (France) (URL) NIAID (USA) (URL)
French Ministry of Research, World Health Organization
Lancelet, Florida
Branchiostoma floridae

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Lancelet, Florida
Branchiostoma floridae

Invertebrate Animal Genome Whole-genome Map
42,645 BAC-end sequences (1X)
Completed
Start: 1-2003
End: 1-2001
RIKEN (Japan) (URL) MEXT (Japan)
Fruitfly
Drosophila melanogaster

Invertebrate Animal Genome Finished
Finishing
Completed
Start: 1-2001
End: unspec.
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
NIGMS (USA) (URL)
NCI (USA) (URL)
HHMI (USA) (URL)
Fruitfly
Drosophila melanogaster

Invertebrate Animal Genome Whole-genome Map
11,706 BAC-end Sequences (1X)
Completed
Start: 1-2001
End: 1-2001
RIKEN (Japan) (URL) MEXT (Japan)
Nematode
Caenorhabditis briggsae

Invertebrate Animal Genome Improved Draft
Whole Genome Shotgun
Start: 12-2004
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Nematode
Caenorhabditis briggsae

Invertebrate Animal Genome Other,
Unspecified
BAC-based Shotgun (or other large clone)
Start: unspec.
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Planarian
Schmidtea mediterranea

Invertebrate Animal Genome Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (8X)
Start: 11-2003
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila simulans

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 12-2003
End: 4-2005
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila simulans

Invertebrate Animal Genome Whole-genome Map
16,110 BAC-end sequences (1X)
Completed
Start: 1-2001
End: 1-2001
RIKEN (Japan) (URL) MEXT (Japan)
Fruitfly
Drosophila yakuba

Invertebrate Animal Genome Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (8X)
Completed
Start: 12-2003
End: 2-2006
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Nematode
Caenorhabditis elegans

Invertebrate Animal Genome Finished
Whole Genome Shotgun Finishing
Completed
Start: 1-2001
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Nematode
Caenorhabditis elegans

Invertebrate Animal Genome Finished
Whole Genome Shotgun Finishing
Completed
Start: 1-2001
End: unspec.
SI (UK) (URL) Wellcome Trust (UK) (URL)
Flea, water
Daphnia pulex

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Choanoflagellate
Monosiga brevicollis

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Sea anemone
Nematostella vectensis

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Fruitfly
Drosophila erecta

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 9-2004
End: 3-2005
ABC (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila virilis

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 5-2004
End: 9-2004
ABC (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila grimshawi

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 11-2004
End: 6-2005
ABC (USA) (URL)
Fruitfly
Drosophila mojavensis

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 8-2004
End: 11-2004
ABC (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila ananassae

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: 6-2004
End: 6-2004
ABC (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila ananassae

Invertebrate Animal Genome Whole-genome Map
16,047 BAC-end Sequences (1X)
Completed
Start: 1-2001
End: 1-2001
RIKEN (Japan) (URL) MEXT (Japan)
Fruitfly
Drosophila willistoni

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7.5X)
Start: 2005
End: unspec.
TIGR (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila persimilis

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 7-2005
End: 7-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila sechellia

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: 8-2005
End: 8-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila sechellia

Invertebrate Animal Genome Whole-genome Map
15,251 BAC-end Sequences (1X)
Completed
Start: 1-2001
End: unspec.
RIKEN (Japan) (URL) MEXT (Japan)
Silkworm
Bombyx mori

Invertebrate Animal Genome Draft Assembly
BAC-based Shotgun (or other large clone)
Completed
Start: 1-2001
End: unspec.
ILGP (International) (URL)
Beetle, Red Flour
Tribolium castaneum

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X) BAC-based Shotgun (or other large clone) (0.5X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Mosquito
Aedes aegyptii

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: 10-2005
End: 7-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Mosquito
Aedes aegyptii

Invertebrate Animal Genome
BAC end sequencing
Start: 2005
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Mosquito
Aedes aegyptii

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun
Start: unspec.
End: unspec.
TIGR (USA) (URL) NIAID (USA) (URL)
Larvacean
Oikopleura dioica

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2004
End: unspec.
Project URL
Genoscope (France) (URL) Sars Center
Snail, Freshwater
Biomphalaria glabrata

Invertebrate Animal Genome BAC-end sequence,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (3X)
Start: 1-2006
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Wellcome Trust (UK) (URL)
The Wellcome Trust Sanger Institute is providing at least 40,000 ESTs for this project.
Polyp, Freshwater
Hydra magnipapillata

Invertebrate Animal Genome Draft Assembly
(0.5X)
Start: 1-2005
End: unspec.
JCVI (USA) (URL) NHGRI (USA) (URL)
Slime mold
Physarum polycephalum

Invertebrate Animal Genome Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6X)
Start: 1-2005
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Downy Mildew
Hyaloperonospora parasitica Emoy2 strain

Invertebrate Animal Genome Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (8X)
Start: 9-2004
End: 8-2007
WUGSC (USA) (URL) NSF (USA) (URL)
Aphid, Pea
Buchnera aphidicola str. APS - Acyrthosiphon pisum

Invertebrate Animal Genome Finished genome
Whole Genome Shotgun (7X) Finishing
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan) (URL)
Aphid, Pea
Buchnera aphidicola str. APS - Acyrthosiphon pisum

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 5-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Fruitfly
Drosophila auraria

Invertebrate Animal Genome BAC-end sequence
13,013 BAC-end sequences (1X)
Completed
Start: 1-2003
End: 1-2001
RIKEN (Japan) (URL) MEXT (Japan)
Tick
Ixodes scapularis Wikel

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 2-2006
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Mosquito
Culex pipiens quinquefasciatus JHB

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (4X)
Completed
Start: unspec.
End: 3-2007
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Fruitfly
Drosophila willistoni

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (1X)
Completed
Start: 9-2004
End: 6-2005
JCVI (USA) (URL)
Wasp, Parasitoid
Nasonia longicornis

Invertebrate Animal Genome Whole-genome Map,
SNP discovery
Whole Genome Shotgun
Start: 8-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Wasp, Parasitoid
Nasonia giraulti

Invertebrate Animal Genome Whole-genome Map,
SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Wasp, Parasitoid
Nasonia vitripennis

Invertebrate Animal Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Mosquito
Anopheles gambiae M

Invertebrate Animal Genome BAC-end sequence,
Draft Assembly
Whole Genome Shotgun (8X) BAC end sequencing (0.5X)
Start: 6-2006
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Sandfly-Leishmania vector
Phlebotomus papatasi

Invertebrate Animal Genome BAC-end sequence,
Draft Assembly
Whole Genome Shotgun (2X) BAC end sequencing (0.5X) EST and 454 cDNA
Start: 1-2007
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Nematode
Pristionchus pacificus var California

Invertebrate Animal Genome BAC-end sequence,
Draft Assembly
Whole Genome Shotgun (9X)
Start: 8-2004
End: 2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
Trichina worm
Trichinella spiralis

Invertebrate Animal Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
ESTs
Whole Genome Shotgun (8X) Automated sequence improvement BAC fingerprint map, BAC end sequences, and ESTs (0.5X)
Start: 1-2005
End: 6-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Human gut microbiome-100 organisms
Bacteriodetes and Firmicutes

Invertebrate Animal Whole genomes Draft Assembly,
Comparative-grade finished regions
Whole Genome Shotgun (4X) 454 sequence (15X) automated and some manual sequence improvement
Start: 4-2006
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Large Roundworm
Ascaris lumbicoides

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: 1-2007
End: 1-2007
SI (UK) (URL) Wellcome Trust (UK) (URL)
Tapeworm
Echinococcus multiocularis

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: 2007
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Barber pole worm
Haemonchus contortus

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
SI (UK) (URL) Wellcome Trust (UK) (URL)
Hookworm
Nippostrongylus braziliensis

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
SI (UK) (URL) Wellcome Trust (UK) (URL)
Blood fluke
Shistosoma mansoni

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Threadworm
Strongyloides ratti

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
SI (UK) (URL) Wellcome Trust (UK) (URL)
Whipworm
Trichuris muris

Invertebrate Animal Genome
Whole Genome Shotgun (8X)
Start: unspec.
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Nematode
Caenorhabditis remanei

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (9X)
Start: 2-2004
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Nematode
Caenorhabditis brenneri

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (9X)
Start: 1-2005
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Nematode
Caenorhabditis japonia

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (9X)
Start: 9-2006
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Nematode
Heterorhabditis bacteriophora

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 12-2005
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Kissing bug
Rhodnius prolixus

Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) automated, primer-directed sequence improvement
Start: 11-2005
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Long arm of Chr 14 Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: 1-2003
Project URL
Genoscope (France) (URL)
Human
Homo sapiens

Mammal Chr 3, 12, part of X Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Genome SNP discovery
Whole Genome Shotgun (1X)
Completed
Start: 5-2004
End: unspec.
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 5, 16, 19 Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Human
Homo sapiens

Mammal Chr 1, 6, 9, 10, 13, 16, 20, 22, X Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Human
Homo sapiens

Mammal Chr 2, 4, 7, Y Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 8, 15, 17, 18q Finished genome
BAC-based Shotgun (or other large clone) Finishing
Start: 4-2003
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 11, 18p, 21 Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 4-2003
End: 4-2003
Project URL
RIKEN (Japan) (URL) MEXT (Japan)
Human
Homo sapiens

Mammal Genome SNP discovery
Whole Chromosome Shotgun (1X)
Start: 5-2003
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Human
Homo sapiens

Mammal Genome SNP discovery
Whole Genome Shotgun (1X)
Completed
Start: unspec.
End: 8-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 2, 4, 7, Y Other,
Unspecified
Other
Start: 5-2006
End: 12-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 2, 7, 21 SNP discovery
Whole Genome Shotgun (1X)
Start: 7-2003
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal All chromosomes - segmental duplications Finished
BAC-based Shotgun (or other large clone) Finishing
Start: unspec.
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 15q14-21.3 Finished
BAC-based Shotgun (or other large clone) (8X) Finishing (1X)
Completed
Start: 1-2003
End: unspec.
ISB (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 1: 50.12 Mb Finished
BAC-based Shotgun (or other large clone) (8X) Finishing
Completed
Start: 4-2003
End: unspec.
UWGC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 3: 61.49 Mb Finished
BAC-based Shotgun (or other large clone) (8X) Finishing
Completed
Start: 4-2003
End: unspec.
UWGC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Chr 7: 17.19 Mb Finished
BAC-based Shotgun (or other large clone) (8X) Finishing
Completed
Start: 4-2003
End: unspec.
UWGC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Telomeres on all chromosomes Finished
Fosmid- and BAC-based Shotgun Finishing
Start: 12-2005
End: 12-2005
Project URL
RIKEN (Japan) (URL) MEXT (Japan)
Human
Homo sapiens

Mammal Genome (NA18517) SNP discovery,
Other,
Structural variation
Whole Genome Shotgun (0.5X)
Completed
Start: 6-2005
End: 9-2005
ABC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Genome (NA18507) SNP discovery,
Other,
Structural variatino
Whole Genome Shotgun (0.5X)
Completed
Start: 9-2005
End: 2-2006
ABC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Genome (NA18956) SNP discovery,
Other,
Structural variation
Whole Genome Shotgun (0.5X)
Completed
Start: 1-2006
End: 3-2006
ABC (USA) (URL) NHGRI (USA) (URL)
Human
Homo sapiens

Mammal Genome (NA19240) SNP discovery,
Other,
Structural Variation
Whole Genome Shotgun (0.5X)
Start: 3-2006
End: 5-2006
ABC (USA) (URL) NHGRI (USA) (URL)
Mouse
Mus musculus

Mammal Chr 2, 4, 11, X Finished region
Finishing
Completed
Start: 1-2004
End: unspec.
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Mouse
Mus musculus

Mammal Regions on all chr. excluding 2,4, 11, X Finished region
Whole Genome Shotgun BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 12-2005
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Mouse
Mus musculus

Mammal Regions on all chr. excluding 2, 4, 11, X Finished region
Whole Genome Shotgun Finishing
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Mouse
Mus musculus

Mammal Chr 2: 1Mb Finished region
BAC-based Shotgun (or other large clone) Finishing
Start: 3-2004
End: unspec.
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Mouse
Mus musculus

Mammal Chr 12 (IgH locus): 2 Mb Finished region
BAC-based Shotgun (or other large clone) (4X) Finishing (10X)
Start: 3-2004
End: unspec.
Project URL
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Mouse
Mus musculus

Mammal Chr Y Finished region
BAC-based Shotgun (or other large clone) Whole Genome Shotgun Finishing
Start: 12-2006
End: 12-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Mouse
Mus musculus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Completed
Start: 8-2003
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Mouse
Mus musculus

Mammal Chr 6, 10 Finished region
Finishing
Completed
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Mouse
Mus musculus

Mammal 1 Mb on chromosome 16q Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan) (URL)
Mouse
Mus musculus

Mammal 1 Mb on chromosome 7 Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan) (URL)
Mouse
Mus musculus

Mammal IDD1, IDD3.1, IDD4.1, IDD4.2, IDD4.2Q, IDD5.1, IDD5.3, IDD5.4, IDD6.1, IDD6.2, IDD6.3, IDD9.1, IDD9.1M, IDD9.2, IDD9.3, IDD10.1, IDD16.1, IDD18.1, IDD18.2 Finished region
Finishing
Start: unspec.
End: 11-2007
Project URL
SI (UK) (URL) Wellcome Trust (UK) (URL)
Immune Tolerance Network
Chimpanzee
Pan troglodytes

Mammal Chr 22: 8.5Mb Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2003
End: unspec.
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Chimpanzee
Pan troglodytes

Mammal Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Completed
Start: 5-2003
End: 8-2004
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes

Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes

Mammal Chr 7, Y Finished
BAC-based Shotgun (or other large clone) Finishing
Start: 6-2004
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes

Mammal Chromosome Y male-specific region Finished genome
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 12-2004
End: 7-2005
RIKEN (Japan) (URL)
Chimpanzee
Pan troglodytes

Mammal Genome Whole-genome Map
175,755 BAC-end sequences (1X)
Completed
Start: 1-2003
End: 1-2003
RIKEN (Japan) (URL)
Chimpanzee
Pan troglodytes

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Chimpanzee
Pan troglodytes

Mammal Chr 22 Finished
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: unspec.
RIKEN (Japan) (URL)
Chimpanzee
Pan troglodytes

Mammal 40Mb on chromosome X Finished region
BAC-based Shotgun (or other large clone) Finishing
Start: 7-2005
End: 6-2008
Project URL
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Rat
Rattus norvegicus

Mammal QTLs Finishing
Whole Genome Shotgun BAC-based Shotgun (or other large clone)
Completed
Start: 12-2004
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Rat
Rattus norvegicus

Mammal Genome Draft Assembly
Whole Genome Shotgun (5X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 1-2003
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
NHLBI (USA) (URL)
Rat
Rattus norvegicus

Mammal Chr 1, 10: 10Mb (selected QTLs) Other,
Partially Finished
BAC-based Shotgun (or other large clone) (4X) Finishing (10X)
Completed
Start: 2-2004
End: 12-2004
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Rat
Rattus norvegicus

Mammal MHC Chr 20: 4 Mb Finished
BAC-based Shotgun (or other large clone) Finishing
Start: 5-2003
End: unspec.
Project URL
GGSAC (Germany) (URL) BMBF (Germany) (URL)
Rat
Rattus norvegicus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Completed
Start: 8-2003
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Rat
Rattus norvegicus

Mammal Genome Finished region,
SNP discovery
Other
Start: 4-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Rat
Rattus norvegicus

Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Dog
Canis familiaris

Mammal Genome Draft Assembly,
SNP discovery,
Other,
Improved Genome
Whole Genome Shotgun (6.5X) BAC-based Shotgun (or other large clone)
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
American Kennel Club
Dog
Canis familiaris

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Dog
Canis familiaris

Mammal Genome Draft Assembly
BAC-end sequences (10X)
Completed
Start: 1-2003
End: 1-2003
ABC (USA) (URL) NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) BAC-based Shotgun (or other large clone) (2X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 8-2004
End: unspec.
TIGR (USA) (URL) NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: unspec.
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: unspec.
End: unspec.
JCVI (USA) (URL) NHGRI (USA) (URL)
Macaque, Rhesus
Macaca mulatta

Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Pig, Wild
Sus scrofa

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Pig, Wild
Sus scrofa

Mammal Genome Draft Assembly,
Finished region,
SNP discovery
BAC-based Shotgun (or other large clone) (3X) Whole genome shotgun to 6X of SSC 4, 7 & 14 (3X)
Start: 4-2006
End: 12-2008
Project URL
SI (UK) (URL) USDA (USA) (URL)
Wellcome Trust (UK) (URL)
National Pork Board (USA); Iowa Pork Producers Association (USA); Iowa State University (USA); North Carolina Pork Council (USA); North Carolina Agriculturaal Research Service (USA); Korean National Livestock Research Institute; The Institute for Pig Genetics (Netherlands); National Institute of Agrobiological Science (Japan); European Union Cutting Edge Genomics for Sustainable Animal Breeding
Bovine
Bos taurus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Bovine
Bos taurus

Mammal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 11-2006
End: 2007
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus

Mammal Selected regions Holstein breed SNP discovery
BAC-based Shotgun (or other large clone)
Start: 3-2006
End: 2006
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus

Mammal Genomes of 8 breeds SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) USDA (USA) (URL)
NHGRI (USA) (URL)
Genome Canada (Canada) (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus

Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Mouse, Wild Japanese
Mus musculus molossinus

Mammal Genome Whole-genome Map
337,471 BAC-end Sequences (1X)
Completed
Start: unspec.
End: unspec.
RIKEN (Japan) (URL) MEXT (Japan)
Macaque, Japanese
Macaca fuscata

Mammal Genome Whole-genome Map
167,159 BAC-end Sequences (1X)
Completed
Start: unspec.
End: unspec.
RIKEN (Japan) (URL) MEXT (Japan)
Orangutan
Pongo pygmaeus pygmaeus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Orangutan
Pongo pygmaeus pygmaeus

Mammal Genome Genome assembly,
Finished region,
SNP discovery
Whole Genome Shotgun (3X)
Start: 2-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Orangutan
Pongo pygmaeus pygmaeus

Mammal Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 6-2006
End: 2-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Baboon
Papio hamadryas

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Monkey, Vervet
Cercopithecus aethiops

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Horse
Equus caballus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Horse
Equus caballus

Mammal Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 2-2006
End: 8-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Cat
Felis catus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Cat
Felis catus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 8-2005
ABC (USA) (URL) NHGRI (USA) (URL)
Cat
Felis catus

Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 1-2008
End: 5-2008
WUGSC (USA) (URL) NHGRI (USA) (URL)
Bat, Jamaican Fruit-Eating
Artibeus jamaicensis

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Bat, Short-tailed Fruit
Carollia perspicillata

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Rabbit
Oryctolagus cuniculus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Rabbit
Oryctolagus cuniculus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) Whole Genome Shotgun (5X)
Start: 1-2005
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Hedgehog
Atelerix albiventris

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Platypus
Ornithorhynchus anatinus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Platypus
Ornithorhynchus anatinus

Mammal Genome Whole-genome Map
BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan) (URL) MEXT (Japan)
Opossum
Monodelphis domestica

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Opossum
Monodelphis domestica

Mammal Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (7X)
Completed
Start: 10-2004
End: 10-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Opossum
Monodelphis domestica

Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Dunnart
Sminthopsis crassicaudata

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Galago/Bush Baby
Otolemur garnetti

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Galago/Bush Baby
Otolemur garnetti

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 12-2005
End: 1-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus

Mammal Genome Whole-genome Map
BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan) (URL) RIKEN-GSC
Marmoset, Common
Callithrix jacchus

Mammal Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus

Mammal Y chromosome Draft Assembly
BAC-based Shotgun (or other large clone)
Start: 5-2007
End: unspec.
WUGSC (USA) (URL) NHGRI (USA) (URL)
Marmoset, Common
Callithrix jacchus

Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 5-2006
End: 4-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 1-2005
End: 1-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Bat, Horseshoe
Rhinolophus ferrumequinum

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Guinea pig
Cavia porcellus

Mammal Genome Draft Assembly
Whole Genome Shotgun (7X)
Start: 7-2005
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Guinea pig
Cavia porcellus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Shrew, European common
Sorex araneus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Elephant, African
Loxodonta africana

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) Whole Genome Shotgun (5X)
Start: 1-2005
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Hedgehog, European
Erinaceus europeaus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 10-2005
End: 10-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Tenrec
Echinops telfairi

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 5-2005
End: 5-2005
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Tenrec
Echinops telfairi

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Wallaby, Tammar
Macropus eugenii

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 6-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Australian Genome Research Facility Ltd. (AGRF) (URL) The Victorian State Government (URL) Brockhoff Foundation
Wallaby, Tammar
Macropus eugenii

Mammal Chromosome X Whole-genome Map
20,000 Fosmid-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan) (URL) MEXT (Japan)
Wallaby, Tammar
Macropus eugenii

Mammal Genome Whole-genome Map
BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan) (URL) MEXT (Japan)
Wallaby, Tammar
Macropus eugenii

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Whale, False Killer
Pseudorca crassidens

Mammal Genome Whole-genome Map
200,000 BAC-end sequences (1X)
Start: 2-2001
End: 3-2007
RIKEN (Japan) (URL) MEXT (Japan)
Dog
Canis familiaris

Mammal Genome Whole-genome Map
200,000 BAC-end sequences (1X)
Start: unspec.
End: 3-2007
RIKEN (Japan) (URL)
Squirrel, Ground
Spermophilus tridecemlineatus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 10-2005
End: 6-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Shrew, Tree
Tupaia belangeri

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 9-2005
End: 7-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Shrew, Tree
Tupaia belangeri

Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 9-2007
End: 3-2008
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Shrew, Tree
Tupaia belangeri

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Lemur, Gray Mouse
Microcebus murinus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Pika
Ochotona princeps

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 8-2006
End: 4-2007
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Bat, Little Brown
Myotis lucifugus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X) Whole Genome Shotgun (5X)
Start: 8-2005
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Bat, Little Brown
Myotis lucifugus

Mammal Selected Regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Hyrax
Procavia capensis

Mammal Genome Whole-genome Map
Whole Genome Shotgun (2X)
Start: 3-2006
End: unspec.
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Hyrax
Procavia capensis

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Lemur, Black
Eulemur macaco macaco

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Muntjac, Chinese
Muntiacus reevesi

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Dusky titi
Callicebus moloch

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Echidna, Australian
Tachyglossus aculeatus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Elephant, African
Loxodonta africana

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Ferret
Mustela furo

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Gibbon
Nomascus leucogenys leucogenys

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Gorilla
Gorilla gorilla gorilla

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Gorilla
Gorilla gorilla gorilla

Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 11-2006
End: unspec.
SI (UK) (URL) Wellcome Trust (UK) (URL)
Lemur, ring-tailed
Lemur catta

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Leopard, Clouded
neofelis nebulosa

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Monkey, Bolivian squirrel
Saimiri boliviensis boliviensis

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Monkey, Black-handed spider
Ateles geoffroyi

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Monkey, Colobus
Colobus guereza

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Monkey, Owl
Aotus nancymaae

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Muntjak, Indian
Muntiacus muntjak vaginalis

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Opossum, North American
Didelphis virginiana

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Sheep
Ovis aries

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Squirrel, Thirteen-lined Ground
Spermophilus tridecemlineatus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Dolphin, Bottlenose
Tursiops truncatus

Mammal Genome Whole-genome Map
Whole Genome Shotgun (2.5X)
Start: 7-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Kangaroo rat
Dipodomys ordii

Mammal Genome Whole-genome Map
Whole Genome Shotgun (2X)
Start: 8-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Megabat
Pteropus vampyrus

Mammal Genome Whole-genome Map
Whole Genome Shotgun (2X)
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Megabat
Pteropus vampyrus

Mammal Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Armadillo
Dasypus novemcinctus

Mammal Genome Draft Assembly
Whole Genome Shotgun (4X)
Start: 10-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Gibbon, Northern white-cheeked
Nomascuc leucogenys

Mammal Genome Draft Assembly
Whole Genome Shotgun (3X)
Start: 2007
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Sloth
Choloepus hoffmanni

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 6-2007
End: 12-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Pangolin, Chinese
Manis pentadactyla

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 7-2007
End: 1-2008
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Colugo
Cynocephalus variegatus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 6-2007
End: 2-2008
WUGSC (USA) (URL) NHGRI (USA) (URL)
Alpaca
Vicugna pacos

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 8-2007
End: 12-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Platypus
Ornithorhynchus anatinus

Mammal Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 12-2006
End: 4-2007
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Tarsier
Tarsius syrichta

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Start: 5-2007
End: 4-2008
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Cat
Felis catus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Common Shrew, European
Sorex araneus

Mammal Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: 9-2005
End: 6-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Corn
Zea mays B73

Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (10X)
Start: 8-2004
End: unspec.
Multiple Groups () (URL) NSF (USA) (URL)
Corn
Zea mays B73

Plant Genome BAC-end sequence
400, 000 BAC-end sequencing
Start: 8-2004
End: unspec.
Multiple Groups () (URL) NSF (USA) (URL)
Tomato
Lycopersicon esculentum

Plant Genome Other
BAC-based Shotgun (or other large clone) (8X)
Start: 9-2004
End: unspec.
Project URL
Multiple Groups () (URL) NSF (USA) (URL)
Souces of funding include Korea , China, UK, India, Spain, Netherlands, France, Japan, and Italy.
Mustard weed
Arabidopsis thaliana

Plant Genome Unspecified
MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA) (URL)
Wine Grape
Vitis vinifera

Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (12X)
Start: 12-2004
End: 12-2007
Project URL
Genoscope (France) (URL) CNRG (Consortium national de recherche en génomique) ANR (Agence nationale de la recherche)
Corn
Zea mays B73

Plant Gene-rich regions Other,
assembled onto maize and rice genomes
1M reads
Start: 8-2004
End: unspec.
Project URL
TIGR (USA) (URL) NSF (USA) (URL)
Corn
Zea mays B73

Plant Genome pilot project
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International) (URL) NSF (USA) (URL)
NSF
Corn
Zea mays B73

Plant Genome Draft Assembly,
Finished region
BAC-based Shotgun (or other large clone) (6X)
Start: 11-2005
End: 10-2008
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Joint project with NSF/USDA/DOE. Shotgun sequencing of Mo17 by the Joint Genome Institute.
Corn
Zea mays B73

Plant Genome gene-enrichment
Methyl-filtration (0.5X)
Completed
Start: 1-2004
End: 1-2001
Project URL
PGSP (International) (URL) NSF (USA) (URL)
USDOE (USA) (URL)
NSF maize pilot project
Corn
Zea mays B73

Plant Genome BAC-end sequence
475,000 BAC-ends (8X)
Completed
Start: 1-2001
End: 5-2004
Project URL
PGSP (International) (URL) NSF
Corn
Zea mays B73

Plant Genome Draft Assembly
Methyl-filtration (0.5X)
Completed
Start: 1-2004
End: 1-2001
PGSP (International) (URL) USDOE 300 Mb of total reads
Rice
Oryza sativa japonica

Plant Genome Unspecified
Whole Genome Shotgun MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Rice
Oryza sativa japonica

Plant Genome Finished sequence
BAC-based Shotgun (or other large clone) (10X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
NSF, USDA, USDOE, Rutgers University, other countries
Rice
Oryza sativa japonica

Plant Chr 3, 10, 11
BAC-based Shotgun (or other large clone)
Start: 12-2004
End: unspec.
Project URL
TIGR (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Rice
Oryza sativa japonica

Plant Chr 12 Finished region
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: 9-2004
Project URL
Genoscope (France) (URL)
Sorghum
Sorghum vulgare

Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International) (URL) NSF (USA) (URL)
NSF Comparative genomics between maize, sorghum, and rice
Algae, Green
Chlamydomonas reinhardtii

Plant Genome Draft Assembly,
Other,
Automated annotation and community curation
Whole Genome Shotgun (8X)
Start: 12-2003
End: 5-2007
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Corn
Zea mays

Plant Chromosome 10 Draft Assembly
Whole Chromosome Shotgun (6X)
Start: 11-2005
End: 10-2007
JCVI (USA) (URL) USDA (USA) (URL)
NSF (USA) (URL)
USDOE (USA) (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
Poplar
Populus spp.

Plant Genome Other,
Unspecified
Other
Completed
Start: 2006
End: 1-2006
Project URL
BCGSC (Canada) (URL) Genome Canada (Canada) (URL)
Poplar
Populus spp.

Plant Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 6-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Legume
Medicago truncatula

Plant Chr 5 Draft Assembly
BAC-based Shotgun (or other large clone) (10X) Finishing
Start: 1-2004
End: unspec.
Genoscope (France) (URL) European Union
Legume
Medicago truncatula

Plant chromosome 3 Finished region
Whole Genome Shotgun Finishing
Start: unspec.
End: 2-2008
SI (UK) (URL) Wellcome Trust (UK) (URL)
BBSRC, European Commission
Phytoplankton
Ostreococcus sp.

Plant Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Legume
Medicago truncatula

Plant Euchromatic Gene-Rich Regions Genome structure and Gene discovery
BAC-based Shotgun (or other large clone)
Start: 2006
End: unspec.
Project URL
TIGR (USA) (URL) NSF (USA) (URL)
EU, BBSRC, INRA
Legume
Medicago truncatula

Plant Genome BAC-end sequence
BAC-based Shotgun (or other large clone) (1X)
Completed
Start: 1-2001
End: 1-2003
Project URL
PGSP (International) (URL) NSF (USA) (URL)
NSF, Noble Foundation, EU
Algae, Green
Bathycoccus sp. (BAN7)

Plant Genome Finished genome
Whole Genome Shotgun (12X) Finishing (0.5X)
Start: 10-2007
End: 12-2008
Genoscope (France) (URL) Consortium National de Recherche en Genomique (CNRG)
Wheat
Triticum aestivum

Plant 20Mb on chromosome 3B Regional assembly,
Finished region
BAC-based Shotgun (or other large clone) (12X) Finishing
Start: 2-2007
End: unspec.
Genoscope (France) (URL) CNRG (National Consortium of Genomic Research)
Algae, Red
Chondrus crispus

Plant Genome Draft Assembly
Whole Genome Shotgun (12X)
Start: 2-2007
End: 12-2009
Genoscope (France) (URL) CNRG (National Consortium of Genomic Research)
Tomato
Solanum lycopersicum

Plant chromosome 4 Finished region
Finishing
Start: 1-2006
End: 10-2008
SI (UK) (URL) Wellcome Trust (UK) (URL)
BBSRC
Paramecium
Paramecium tetraurelia

Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2004
End: unspec.
Project URL
Genoscope (France) (URL)
Ciliate
Tetrahymena thermophila

Protist Macronuclear Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 2-2005
End: unspec.
Project URL
TIGR (USA) (URL) NSF (USA) (URL)
NIGMS (USA) (URL)
Slime mold
Dictyostelium discoideum

Protist Chr 1, 2, 3 Finished region
Whole Genome Shotgun (6.5X)
Completed
Start: 12-2003
End: 5-2005
Project URL
GGSAC (Germany) (URL) DFG (Germany) (URL)
Plasmodium
Plasmodium falciparum HB3

Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2005
End: 2-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Diatom, Ocean
Thalassiosira pseudonana

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 6-2003
End: unspec.
Project URL
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Phytoplankton
Emiliania huxleyi

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2004
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Diatom, Pennate
Phaeodactylum tricornutum

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA) (URL) USDOE (USA) (URL)
Trypanosome
Trypanosoma cruzi

Protist Genome Draft Assembly,
Finished region
Whole Genome Shotgun
Completed
Start: 4-2005
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Trypanosome
Trypanosoma brucei

Protist Chr 2,3,4,5,6,7,8 Draft Assembly
BAC-based Shotgun (or other large clone) Finishing
Completed
Start: 1-2001
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Human schistosomiasis parasite
Schistosoma mansoni

Protist Genome Draft Assembly
Whole Genome Shotgun
Start: 4-2005
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Wellcome Trust (UK) (URL)
Babesia
Babesia bovis

Protist Genome Finished
Whole Genome Shotgun Finishing
Start: 12-2005
End: unspec.
TIGR (USA) (URL) USDA (USA) (URL)
Toxoplasma
Toxoplasma gondii

Protist Genome Draft Assembly
Whole Genome Shotgun
Start: unspec.
End: unspec.
TIGR (USA) (URL) NIAID (USA) (URL)
Nematode, Parasitic
Brugia malayi

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 10-2004
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Plasmodium
Plasmodium vivax

Protist Genome
Finishing (10X)
Completed
Start: 12-2001
End: 3-2007
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Burroughs Wellcome Fund, USDoD
Mouse malaria parasite
Plasmodium yoelii

Protist Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
USDoD
Mouse malaria parasite
Plasmodium yoelii

Protist Genome Draft Assembly
Whole Genome Shotgun (6X)
Start: 1-2001
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
USDoD
Human trichomoniasis parasite
Trichomonas vaginalis

Protist Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 10-2002
End: 4-2006
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Entamoeba
Entamoeba histolytica

Protist Genome Draft Assembly
Whole Genome Shotgun (12X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Wellcome Trust (UK) (URL)
Entamoeba
Entamoeba dispar

Protist Genome Draft Assembly
Whole Genome Shotgun (2X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Wellcome Trust (UK) (URL)
Entamoeba
Entamoeba invadens

Protist Genome Draft Assembly
Whole Genome Shotgun (3X)
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Wellcome Trust (UK) (URL)
Cryptococcus
Cryptococcus neoformans B-3501A

Protist Genome Draft Assembly
Whole Genome Shotgun
Completed
Start: unspec.
End: unspec.
Project URL
TIGR (USA) (URL) NIAID (USA) (URL)
Parasitic Ciliate
Ichthyophthirius multifiliis

Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2007
End: 11-2009
CUCVM (USA) (URL) NSF (USA) (URL)
Parasitic alveolate
Perkinsus marinus

Protist Genome Draft Assembly
Whole Genome Shotgun (1X)
Start: 8-2005
End: unspec.
TIGR (USA) (URL) NSF (USA) (URL)
Algae, Brown
Ectocarpus silicosus

Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 10-2004
End: unspec.
Project URL
Genoscope (France) (URL) CNRG (Consortium national de recherche en génomique)
Ciliate
Oxytricha trifallax (macronucleus)

Protist Whole chromosomes Draft Assembly,
Comparative-grade finished regions
Whole Chromosome Shotgun (4X)
Start: 11-2004
End: unspec.
Project URL
WUGSC (USA) (URL) NHGRI (USA) (URL)
Plasmodium
Plasmodium falciparum Dd2

Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: 2005
End: 8-2006
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Amoeba
Acanthamoeba castellanii

Protist Genome Draft Assembly
Whole Genome Shotgun (20X)
Start: 5-2006
End: unspec.
Project URL
BCM-HGSC (USA) (URL) NHGRI (USA) (URL)
Slime mold
Dictyostelium fasciculatum

Protist Genome Draft Assembly,
Regional assembly,
Finished region
Whole Genome Shotgun (8X)
Start: 3-2006
End: 3-2008
GGSAC (Germany) (URL) DFG (Germany) (URL)
Slime mold
Polysphondilium pallidum

Protist whole genome Finished genome
Whole Genome Shotgun Finishing
Start: 3-2006
End: 12-2008
GGSAC (Germany) (URL) Wellcome Trust (UK) (URL)
DFG (Germany) (URL)
Acanthocoepis
Acanthocoepis sp.

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Stephanoeca
Stephanoeca sp.

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Amastigomonas
Amastigomonas sp. ATCC 50062

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Amoebidium
Amoebidium parasiticum JAP-7-2

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Capsaspora
Capsaspora owczarzaki ATCC 30864

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Mortierella
Mortierella verticillata NRRL 6337

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Nuclearia
Nuclearia simplex CCAP 1552/2

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 3-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Potato Late Blight
Phytophthora infestans T30-4

Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (8X)
Completed
Start: 11-2003
End: unspec.
BI/MIT (USA) (URL) NSF (USA) (URL)
Plasmodium
Plasmodium falciparum IGH-CR14

Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum JDP8

Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum RAJ116

Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Plasmodium
Plasmodium falciparum 87_239

Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Plasmodium, Chimpanzee
Plasmodium reichenowi

Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NIAID (USA) (URL)
Proterospongia
Proterospongia sp. ATCC 50818

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Spizellomyces
Spizellomyces punctatus DAOM BR117

Protist Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 4-2007
End: unspec.
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Lizard, Anole
Anolis carolinensis

Reptile Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: 7-2006
End: 7-2006
Project URL
BI/MIT (USA) (URL) NHGRI (USA) (URL)
Alligator
Alligator mississippiensis

Reptile Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Tortoise, Desert
Gopherus agassizii

Reptile Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
Tuatara
Sphenodon punctatus

Reptile Selected regions Regional assembly,
Comparative-grade finished regions
BAC-based Shotgun (or other large clone) (8X)
Start: unspec.
End: unspec.
NISC (USA) (URL) NHGRI (USA) (URL)
 434 Organisms on Record.


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