Babesia
Babesia bovis
 Protist Genome Finished
Whole Genome Shotgun Finishing
Start: 12-2005
End: unspec.
TIGR (USA)
(URL)
USDA (USA) (URL)
Beetle, Red Flour
Tribolium castaneum
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (7X) BAC-based Shotgun (or other large clone) (0.5X)
Start: 12-2005
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Bovine
Bos taurus
 Mammal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Start: 11-2006
End: 2007
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus
 Mammal Selected regions Holstein breed SNP discovery
BAC-based Shotgun (or other large clone)
Start: 3-2006
End: 2006
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Bovine
Bos taurus
 Mammal Genomes of 8 breeds SNP discovery
Whole Genome Shotgun
Start: 1-2006
End: unspec.
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Genome Canada (URL)
State of Texas (USA), CSIRO (Australia), Agritech Investments Ltd., Dairy Insight Inc., and AgResearch Ltd. (New Zealand), and Cattleman's Beef Board, Texas Beef Council and South Dakota Beef Council (USA)
Chicken
Gallus gallus
 Bird Genome Finished region
Whole Genome Shotgun (6X) Finishing
Start: 8-2006
End: unspec.
Project URL
WUGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Corn
Zea mays
 Plant Chromosome 10 Draft Assembly
Whole Chromosome Shotgun (6X)
Start: 11-2005
End: 10-2007
JCVI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
Honey bee
Apis mellifera
 Invertebrate Animal Genome Draft Assembly
Whole Genome Shotgun (6X) BAC-based Shotgun (or other large clone) (2X)
Completed
Start: 6-2005
End: 7-2006
Project URL
BCM-HGSC (USA)
(URL)
USDA (USA) (URL)
NHGRI (URL)
Leaf Blight, Maize
Colletotrichum graminicola M1.001
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 1-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Mold, White
Sclerotinia sclerotiorum 1980
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Neurospora
Neurospora crassa
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (10X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Pig, domesticated
Sus scrofa
 Mammal Genome Draft Assembly,
Finished region,
SNP discovery
BAC-based Shotgun (or other large clone) (3X)
Start: 4-2006
End: 12-2008
Project URL
SI (UK)
(URL)
USDA (UK) (URL)
Wellcome Trust (URL)
National Pork Board (USA); Iowa Pork Producers Association (USA); Iowa State University (USA); North Carolina Pork Council (USA); North Carolina Agriculturaal Research Service (USA); Korean National Livestock Research Institute; The Institute for Pig Genetics (Netherlands); National Institute of Agrobiological Science (Japan); European Union Cutting Edge Genomics for Sustainable Animal Breeding
Rice
Oryza sativa japonica
 Plant Genome Unspecified
Whole Genome Shotgun MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Rice
Oryza sativa japonica
 Plant Genome Finished sequence
BAC-based Shotgun (or other large clone) (10X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
USDA (International) (URL)
NSF (URL)
USDOE (URL)
NSF, USDA, USDOE, Rutgers University, other countries
Rice
Oryza sativa japonica
 Plant Chr 3, 10, 11
BAC-based Shotgun (or other large clone)
Start: 12-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Rice blast
Magnaporthe grisea 70-15
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (7X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Rot (necrotrophic fungus)
Alternaria brassicicola
 Fungus Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6.5X) BAC fingerprint map; BAC end sequence (0.5X) ESTs and 454 cDNA
Start: 9-2004
End: 8-2007
Project URL
WUGSC (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome Unspecified
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome
Whole Genome Shotgun (5X) BAC-end sequencing
Start: 8-2004
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Soybean rust (New World)
Phakopsora meibomiae
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
USDOE (URL)
Soybean rust (Old World)
Phakopsora pachyrhizi
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
USDOE (URL)
Sudden Oak Death
Phytophthora ramorum
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
USDOE (URL)
Verticillium Wilts
Verticillium albo-atrum VaMs.102
 Fungus Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (4X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
Verticillium Wilts
Verticillium dahliae VdLs.17
 Fungus Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (7X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
Verticillium Wilts
Verticillium longisporum VdBob.70
 Fungus Genome Other,
Comparative Analysis
Whole Genome Shotgun (0.5X)
Start: 9-2006
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
Wheat Head Blight
Fusarium graminearum PH-1
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
Wheat Tan Spot
Pyrenophora tritici-repentis Pt-1C-BFP
 Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: 3-2007
Project URL
BI/MIT (USA)
(URL)
USDA (USA) (URL)
NSF (URL)
 27 Organisms on Record.


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