Ciliate
Tetrahymena thermophila
 Protist Macronuclear Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 2-2005
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
NIGMS (URL)
Corn
Zea mays
 Plant Chromosome 10 Draft Assembly
Whole Chromosome Shotgun (6X)
Start: 11-2005
End: 10-2007
JCVI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Joint project with NSF/USDA/DOE shotgun sequencing of B73 maize by WUSTL GSC.
Corn
Zea mays B73
 Plant Gene-rich regions Other,
assembled onto maize and rice genomes
1M reads
Start: 8-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
Corn
Zea mays B73
 Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (10X)
Start: 8-2004
End: unspec.
Multiple Groups ()
(URL)
NSF (URL)
Corn
Zea mays B73
 Plant Genome BAC-end sequence
400, 000 BAC-end sequencing
Start: 8-2004
End: unspec.
Multiple Groups ()
(URL)
NSF (URL)
Corn
Zea mays B73
 Plant Genome pilot project
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF
Corn
Zea mays B73
 Plant Genome pilot project
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF
Corn
Zea mays B73
 Plant Genome Draft Assembly,
Finished region
BAC-based Shotgun (or other large clone) (6X)
Start: 11-2005
End: 10-2008
Project URL
WUGSC (USA)
(URL)
NSF (USA) (URL)
NHGRI (URL)
USDOE (URL)
Joint project with NSF/USDA/DOE. Shotgun sequencing of Mo17 by the Joint Genome Institute.
Corn
Zea mays B73
 Plant Genome gene-enrichment
Methyl-filtration (0.5X)
Completed
Start: 1-2004
End: 1-2001
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
USDOE (URL)
NSF maize pilot project
Downy Mildew
Hyaloperonospora parasitica Emoy2 strain
 Invertebrate Animal Genome Draft Assembly,
Other,
Automated sequence improvement
Whole Genome Shotgun (8X)
Start: 9-2004
End: 8-2007
WUGSC (USA)
(URL)
NSF (USA) (URL)
Leaf Blight, Maize
Colletotrichum graminicola M1.001
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 1-2007
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Legume
Medicago truncatula
 Plant Euchromatic Gene-Rich Regions Genome structure and Gene discovery
BAC-based Shotgun (or other large clone)
Start: 2006
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
EU, BBSRC, INRA
Legume
Medicago truncatula
 Plant Genome BAC-end sequence
BAC-based Shotgun (or other large clone) (1X)
Completed
Start: 1-2001
End: 1-2003
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF, Noble Foundation, EU
Mold, White
Sclerotinia sclerotiorum 1980
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 10-2005
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Neurospora
Neurospora crassa
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (10X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Neurospora
Neurospora crassa
 Fungus Telomeres (2.4Mb) High quality sequence
Unknown
Start: 9-2003
End: unspec.
Project URL
Multiple Groups ()
(URL)
NSF (URL)
Nosema
Nosema locustae
 Fungus Genome Unspecified
Whole Genome Shotgun (3X)
Start: 9-2005
End: unspec.
Project URL
Multiple Groups ()
(URL)
NSF (URL)
Panama Disease
Fusarium oxysporum FGSC 4286
 Fungus Genome Draft Assembly
Whole Genome Shotgun (7X)
Completed
Start: 3-2006
End: 2-2007
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
Parasitic Ciliate
Ichthyophthirius multifiliis
 Protist Genome Draft Assembly
Whole Genome Shotgun (10X)
Start: 12-2007
End: 11-2009
CUCVM (USA)
(URL)
NSF (USA) (URL)
Parasitic alveolate
Perkinsus marinus
 Protist Genome Draft Assembly
Whole Genome Shotgun (1X)
Start: 8-2005
End: unspec.
TIGR (USA)
(URL)
NSF (USA) (URL)
Potato Late Blight
Phytophthora infestans T30-4
 Protist Genome Draft Assembly,
SNP discovery
Whole Genome Shotgun (8X)
Completed
Start: 11-2003
End: unspec.
BI/MIT (USA)
(URL)
NSF (USA) (URL)
Rice
Oryza sativa japonica
 Plant Genome Unspecified
Whole Genome Shotgun MTP
Completed
Start: 1-2003
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Rice
Oryza sativa japonica
 Plant Genome Finished sequence
BAC-based Shotgun (or other large clone) (10X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
USDA (URL)
USDOE (URL)
NSF, USDA, USDOE, Rutgers University, other countries
Rice
Oryza sativa japonica
 Plant Chr 3, 10, 11
BAC-based Shotgun (or other large clone)
Start: 12-2004
End: unspec.
Project URL
TIGR (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Rice blast
Magnaporthe grisea 70-15
 Fungus Genome Draft Assembly,
Finished genome
Whole Genome Shotgun (7X) Finishing
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Rice blast
Magnaporthe grisea 70-15
 Fungus Telomeres (2.4Mb) High quality sequence
Unknown
Start: 9-2003
End: unspec.
Multiple Groups ()
(URL)
NSF (URL)
Rot (necrotrophic fungus)
Alternaria brassicicola
 Fungus Genome BAC-end sequence,
Whole-genome Map,
Draft Assembly,
Other,
ESTs and 454 cDNA
Whole Genome Shotgun (6.5X) BAC fingerprint map; BAC end sequence (0.5X) ESTs and 454 cDNA
Start: 9-2004
End: 8-2007
Project URL
WUGSC (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Seed Rot, Maize
Fusarium verticillioides 7600
 Fungus Genome Draft Assembly
Whole Genome Shotgun (4X) Whole Genome Shotgun (4X)
Completed
Start: 1-2007
End: 1-2007
BI/MIT (USA)
(URL)
NSF (USA) (URL)
Syngenta: 4X WGS
Sorghum
Sorghum vulgare
 Plant Genome Draft Assembly
BAC-based Shotgun (or other large clone) (12X)
Completed
Start: 12-2004
End: unspec.
Project URL
PGSP (International)
(URL)
NSF (International) (URL)
NSF Comparative genomics between maize, sorghum, and rice
Soybean Root rot
Phytophthora sojae
 Fungus Genome Unspecified
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Soybean Root rot
Phytophthora sojae
 Fungus Genome
Whole Genome Shotgun (5X) BAC-end sequencing
Start: 8-2004
End: unspec.
DOE - JGI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Sudden Oak Death
Phytophthora ramorum
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Start: 12-2003
End: unspec.
DOE - JGI (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
USDOE (URL)
Tomato
Lycopersicon esculentum
 Plant Genome Other
BAC-based Shotgun (or other large clone) (8X)
Start: 9-2004
End: unspec.
Project URL
Multiple Groups ()
(URL)
NSF (URL)
Souces of funding include Korea , China, UK, India, Spain, Netherlands, France, Japan, and Italy.
Wheat Head Blight
Fusarium graminearum PH-1
 Fungus Genome Draft Assembly
Whole Genome Shotgun (10X)
Completed
Start: unspec.
End: unspec.
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Wheat Tan Spot
Pyrenophora tritici-repentis Pt-1C-BFP
 Fungus Genome Draft Assembly
Whole Genome Shotgun (6X)
Completed
Start: unspec.
End: 3-2007
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
USDA (URL)
Wheat stem rust
Puccinia graminis f.sp. triciti CRL75-36-700-3
 Fungus Genome Draft Assembly
Whole Genome Shotgun (8X)
Completed
Start: unspec.
End: 1-2007
Project URL
BI/MIT (USA)
(URL)
NSF (USA) (URL)
 36 Organisms on Record.


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